Hb_086300_010

Information

Type -
Description -
Location Contig86300: 13146-14538
Sequence    

Annotation

kegg
ID rcu:RCOM_0670580
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_002520569.1
description hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID B9S3K0
description Hydrolase, hydrolyzing O-glycosyl compounds, putative OS=Ricinus communis GN=RCOM_0670580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60856: 12322-14568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086300_010 0.0 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
2 Hb_147028_010 0.0708962855 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
3 Hb_020956_030 0.0725529564 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
4 Hb_003162_060 0.0733053838 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
5 Hb_028491_010 0.0744674027 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
6 Hb_005532_030 0.0750571334 - - DNA binding protein, putative [Ricinus communis]
7 Hb_033681_030 0.0773533811 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
8 Hb_001141_100 0.0812204461 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_002374_180 0.0816548377 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
10 Hb_008195_090 0.0818919779 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000803_080 0.0841642203 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_008536_020 0.0875375904 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
13 Hb_002600_170 0.0876748247 - - conserved hypothetical protein [Ricinus communis]
14 Hb_026549_060 0.0884751767 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_006831_090 0.0888986617 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
16 Hb_004607_110 0.0892670502 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
17 Hb_000329_780 0.0968919616 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
18 Hb_131466_010 0.0975371634 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
19 Hb_044478_010 0.0988947008 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
20 Hb_006291_050 0.0990217423 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_086300_010 Hb_086300_010 Hb_147028_010 Hb_147028_010 Hb_086300_010--Hb_147028_010 Hb_020956_030 Hb_020956_030 Hb_086300_010--Hb_020956_030 Hb_003162_060 Hb_003162_060 Hb_086300_010--Hb_003162_060 Hb_028491_010 Hb_028491_010 Hb_086300_010--Hb_028491_010 Hb_005532_030 Hb_005532_030 Hb_086300_010--Hb_005532_030 Hb_033681_030 Hb_033681_030 Hb_086300_010--Hb_033681_030 Hb_001141_100 Hb_001141_100 Hb_147028_010--Hb_001141_100 Hb_147028_010--Hb_028491_010 Hb_000803_080 Hb_000803_080 Hb_147028_010--Hb_000803_080 Hb_001277_130 Hb_001277_130 Hb_147028_010--Hb_001277_130 Hb_001735_040 Hb_001735_040 Hb_147028_010--Hb_001735_040 Hb_020956_030--Hb_003162_060 Hb_001541_200 Hb_001541_200 Hb_020956_030--Hb_001541_200 Hb_001433_090 Hb_001433_090 Hb_020956_030--Hb_001433_090 Hb_026549_060 Hb_026549_060 Hb_020956_030--Hb_026549_060 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020 Hb_003162_060--Hb_005532_030 Hb_003162_060--Hb_026549_060 Hb_003162_060--Hb_001541_200 Hb_003162_060--Hb_001141_100 Hb_004607_110 Hb_004607_110 Hb_028491_010--Hb_004607_110 Hb_028491_010--Hb_001141_100 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_001277_130 Hb_008847_050 Hb_008847_050 Hb_028491_010--Hb_008847_050 Hb_002374_180 Hb_002374_180 Hb_005532_030--Hb_002374_180 Hb_002336_050 Hb_002336_050 Hb_005532_030--Hb_002336_050 Hb_002600_170 Hb_002600_170 Hb_005532_030--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_005532_030--Hb_006831_090 Hb_000329_780 Hb_000329_780 Hb_005532_030--Hb_000329_780 Hb_002338_040 Hb_002338_040 Hb_033681_030--Hb_002338_040 Hb_008195_090 Hb_008195_090 Hb_033681_030--Hb_008195_090 Hb_033681_030--Hb_020956_030 Hb_000477_090 Hb_000477_090 Hb_033681_030--Hb_000477_090 Hb_005483_040 Hb_005483_040 Hb_033681_030--Hb_005483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.294826 2.92637 4.09583 0.0321285 0.0910615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.176802 7.38712

CAGE analysis