Hb_086639_010

Information

Type -
Description -
Location Contig86639: 4752-6068
Sequence    

Annotation

kegg
ID rcu:RCOM_0197040
description ubiquitin-protein ligase, putative
nr
ID XP_002533598.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9LFV5
description F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
trembl
ID B9T5S9
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0197040 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at5g15710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086639_010 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_002754_010 0.0805500973 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_001633_210 0.0833635282 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
4 Hb_005051_020 0.0911282735 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
5 Hb_000787_020 0.0913904568 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001377_260 0.0917432734 - - protein with unknown function [Ricinus communis]
7 Hb_000926_090 0.092133746 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
8 Hb_003304_020 0.092551097 - - Polyadenylate-binding protein RBP47C [Glycine soja]
9 Hb_084646_010 0.0931416169 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
10 Hb_001245_100 0.0932486773 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
11 Hb_012019_010 0.0937418268 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
12 Hb_002046_180 0.0937911313 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
13 Hb_004078_040 0.0945539507 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
14 Hb_001314_070 0.0952575706 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000406_140 0.0957321923 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000056_240 0.095892015 - - PREDICTED: cullin-3A [Jatropha curcas]
17 Hb_001617_050 0.0960061566 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
18 Hb_010812_120 0.0961659091 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
19 Hb_008725_260 0.0962978399 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
20 Hb_000049_210 0.0968304411 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]

Gene co-expression network

sample Hb_086639_010 Hb_086639_010 Hb_002754_010 Hb_002754_010 Hb_086639_010--Hb_002754_010 Hb_001633_210 Hb_001633_210 Hb_086639_010--Hb_001633_210 Hb_005051_020 Hb_005051_020 Hb_086639_010--Hb_005051_020 Hb_000787_020 Hb_000787_020 Hb_086639_010--Hb_000787_020 Hb_001377_260 Hb_001377_260 Hb_086639_010--Hb_001377_260 Hb_000926_090 Hb_000926_090 Hb_086639_010--Hb_000926_090 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_000297_010 Hb_000297_010 Hb_001633_210--Hb_000297_010 Hb_001766_080 Hb_001766_080 Hb_005051_020--Hb_001766_080 Hb_001473_160 Hb_001473_160 Hb_005051_020--Hb_001473_160 Hb_000406_140 Hb_000406_140 Hb_005051_020--Hb_000406_140 Hb_000072_120 Hb_000072_120 Hb_005051_020--Hb_000072_120 Hb_003617_020 Hb_003617_020 Hb_005051_020--Hb_003617_020 Hb_005051_020--Hb_002754_010 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_001377_260--Hb_000140_380 Hb_004078_040 Hb_004078_040 Hb_001377_260--Hb_004078_040 Hb_001377_260--Hb_005051_020 Hb_000430_020 Hb_000430_020 Hb_001377_260--Hb_000430_020 Hb_001377_260--Hb_000890_150 Hb_022256_020 Hb_022256_020 Hb_000926_090--Hb_022256_020 Hb_007317_010 Hb_007317_010 Hb_000926_090--Hb_007317_010 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_000926_090--Hb_164010_040 Hb_022250_060 Hb_022250_060 Hb_000926_090--Hb_022250_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.74509 7.45298 6.05599 8.89574 4.75006 6.42252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52246 12.2899 14.5803 7.38425 5.64682

CAGE analysis