Hb_086639_030

Information

Type -
Description -
Location Contig86639: 15009-21074
Sequence    

Annotation

kegg
ID rcu:RCOM_0791560
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_002525952.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9LFV3
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1
trembl
ID B9SIY3
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0791560 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at5g15730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086639_030 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_001663_050 0.0431294477 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
3 Hb_005463_040 0.0685890399 - - signal transducer, putative [Ricinus communis]
4 Hb_007416_320 0.0742357883 - - conserved hypothetical protein [Ricinus communis]
5 Hb_172932_010 0.0776884608 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003053_020 0.079416611 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
7 Hb_002878_020 0.0794952789 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_008221_140 0.0800282709 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
9 Hb_005539_280 0.0827814572 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
10 Hb_012490_070 0.08442198 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000120_460 0.0853936649 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
12 Hb_001726_020 0.0859621721 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_000016_160 0.088162818 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_034406_030 0.0894220168 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
15 Hb_000976_170 0.0908702468 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
16 Hb_000617_150 0.0911159015 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
17 Hb_001454_190 0.091580666 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
18 Hb_000696_040 0.0916155956 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_000175_060 0.0919759109 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_000291_080 0.092090278 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]

Gene co-expression network

sample Hb_086639_030 Hb_086639_030 Hb_001663_050 Hb_001663_050 Hb_086639_030--Hb_001663_050 Hb_005463_040 Hb_005463_040 Hb_086639_030--Hb_005463_040 Hb_007416_320 Hb_007416_320 Hb_086639_030--Hb_007416_320 Hb_172932_010 Hb_172932_010 Hb_086639_030--Hb_172932_010 Hb_003053_020 Hb_003053_020 Hb_086639_030--Hb_003053_020 Hb_002878_020 Hb_002878_020 Hb_086639_030--Hb_002878_020 Hb_012114_040 Hb_012114_040 Hb_001663_050--Hb_012114_040 Hb_034406_030 Hb_034406_030 Hb_001663_050--Hb_034406_030 Hb_032208_060 Hb_032208_060 Hb_001663_050--Hb_032208_060 Hb_001663_050--Hb_007416_320 Hb_005568_120 Hb_005568_120 Hb_001663_050--Hb_005568_120 Hb_008221_140 Hb_008221_140 Hb_005463_040--Hb_008221_140 Hb_002183_090 Hb_002183_090 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_011534_030 Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_000617_150 Hb_000617_150 Hb_172932_010--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_000783_020 Hb_000783_020 Hb_003053_020--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_003053_020--Hb_003697_040 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_003053_020--Hb_011534_030 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_002878_020--Hb_001633_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.09454 3.10354 2.58728 3.81643 4.03336 4.42161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92586 10.3158 10.5857 6.89979 3.52206

CAGE analysis