Hb_086639_090

Information

Type -
Description -
Location Contig86639: 57914-61109
Sequence    

Annotation

kegg
ID rcu:RCOM_0790710
description 60S ribosomal protein L7a, putative
nr
ID XP_002525937.1
description 60S ribosomal protein L7a, putative [Ricinus communis]
swissprot
ID P35685
description 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1
trembl
ID B9SIW8
description 60S ribosomal protein L7a, putative OS=Ricinus communis GN=RCOM_0790710 PE=4 SV=1
Gene Ontology
ID GO:0030529
description 60s ribosomal protein l7a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61018: 57949-61023 , PASA_asmbl_61019: 60397-60776
cDNA
(Sanger)
(ID:Location)		 014_I18.ab1: 58733-61023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086639_090 0.0 - - 60S ribosomal protein L7a, putative [Ricinus communis]
2 Hb_000134_070 0.0738910967 - - 60S ribosomal protein L6, putative [Ricinus communis]
3 Hb_000676_160 0.0791861095 - - folate carrier protein, putative [Ricinus communis]
4 Hb_000136_170 0.08058389 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
5 Hb_004543_040 0.0814655206 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_006541_010 0.082103167 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
7 Hb_004567_120 0.08267399 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
8 Hb_006478_150 0.0828792558 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
9 Hb_007065_010 0.0830712646 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
10 Hb_001085_270 0.0856686371 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
11 Hb_179296_010 0.0885668274 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
12 Hb_174865_010 0.0889889332 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
13 Hb_011644_030 0.0892513664 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
14 Hb_004216_050 0.0914047951 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
15 Hb_091433_020 0.0916176284 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_000265_050 0.0932170463 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
17 Hb_004157_030 0.0933167708 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_002798_020 0.0936457386 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
19 Hb_000997_120 0.0941033844 - - 40S ribosomal protein S15E [Hevea brasiliensis]
20 Hb_001369_170 0.0952000466 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_086639_090 Hb_086639_090 Hb_000134_070 Hb_000134_070 Hb_086639_090--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_086639_090--Hb_000676_160 Hb_000136_170 Hb_000136_170 Hb_086639_090--Hb_000136_170 Hb_004543_040 Hb_004543_040 Hb_086639_090--Hb_004543_040 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_086639_090--Hb_004567_120 Hb_000134_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_000134_070--Hb_002660_030 Hb_003226_210 Hb_003226_210 Hb_000134_070--Hb_003226_210 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_001505_020 Hb_001505_020 Hb_000134_070--Hb_001505_020 Hb_174865_010 Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_000136_170--Hb_004567_120 Hb_000997_120 Hb_000997_120 Hb_004543_040--Hb_000997_120 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_001369_170 Hb_001369_170 Hb_004543_040--Hb_001369_170 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_006478_150 Hb_006478_150 Hb_004543_040--Hb_006478_150 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_004567_120--Hb_006478_150 Hb_002676_090 Hb_002676_090 Hb_004567_120--Hb_002676_090 Hb_005568_120 Hb_005568_120 Hb_004567_120--Hb_005568_120 Hb_004567_120--Hb_011644_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7148 24.2361 40.3245 47.3913 29.1975 68.7135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.857 216.106 69.4794 66.7854 43.6914

CAGE analysis