Hb_086639_100

Information

Type transcription factor
Description TF Family: G2-like
Location Contig86639: 62732-69041
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04530g
description POPTRDRAFT_241469; hypothetical protein
nr
ID XP_012088113.1
description PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
swissprot
ID Q9LZJ8
description Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1
trembl
ID A0A067JKC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25628 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61020: 63080-63742 , PASA_asmbl_61022: 63938-67909 , PASA_asmbl_61023: 64098-64617 , PASA_asmbl_61024: 68449-68844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086639_100 0.0 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
2 Hb_000248_100 0.1201021217 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
3 Hb_004204_210 0.1268639008 - - PREDICTED: heparanase-like protein 1 [Jatropha curcas]
4 Hb_004577_010 0.1382803314 - - PREDICTED: transmembrane protein 45A [Prunus mume]
5 Hb_003849_120 0.1389483008 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
6 Hb_011188_010 0.1391722501 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
7 Hb_002010_090 0.1449975159 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
8 Hb_009078_020 0.1466777825 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
9 Hb_007290_070 0.1469390082 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
10 Hb_001001_090 0.1475482957 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
11 Hb_024758_020 0.1498876888 - - acyl-CoA binding protein 3B [Vernicia fordii]
12 Hb_003050_150 0.1537108828 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
13 Hb_083078_010 0.1543197054 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
14 Hb_005772_030 0.1544545427 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
15 Hb_004746_010 0.1546822602 - - aldo/keto reductase, putative [Ricinus communis]
16 Hb_002686_410 0.1551862522 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
17 Hb_001205_180 0.155345079 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
18 Hb_002553_010 0.1575006334 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
19 Hb_001488_210 0.1584290101 - - PREDICTED: protein RIK [Jatropha curcas]
20 Hb_000094_150 0.1590796932 - - -

Gene co-expression network

sample Hb_086639_100 Hb_086639_100 Hb_000248_100 Hb_000248_100 Hb_086639_100--Hb_000248_100 Hb_004204_210 Hb_004204_210 Hb_086639_100--Hb_004204_210 Hb_004577_010 Hb_004577_010 Hb_086639_100--Hb_004577_010 Hb_003849_120 Hb_003849_120 Hb_086639_100--Hb_003849_120 Hb_011188_010 Hb_011188_010 Hb_086639_100--Hb_011188_010 Hb_002010_090 Hb_002010_090 Hb_086639_100--Hb_002010_090 Hb_158845_060 Hb_158845_060 Hb_000248_100--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_000248_100--Hb_024758_020 Hb_000094_150 Hb_000094_150 Hb_000248_100--Hb_000094_150 Hb_003964_110 Hb_003964_110 Hb_000248_100--Hb_003964_110 Hb_003050_150 Hb_003050_150 Hb_000248_100--Hb_003050_150 Hb_000261_310 Hb_000261_310 Hb_000248_100--Hb_000261_310 Hb_000984_140 Hb_000984_140 Hb_004204_210--Hb_000984_140 Hb_005772_030 Hb_005772_030 Hb_004204_210--Hb_005772_030 Hb_003470_070 Hb_003470_070 Hb_004204_210--Hb_003470_070 Hb_004746_010 Hb_004746_010 Hb_004204_210--Hb_004746_010 Hb_001140_180 Hb_001140_180 Hb_004204_210--Hb_001140_180 Hb_005701_090 Hb_005701_090 Hb_004204_210--Hb_005701_090 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_000012_400 Hb_000012_400 Hb_003849_120--Hb_000012_400 Hb_000562_100 Hb_000562_100 Hb_003849_120--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_000968_060 Hb_000968_060 Hb_003849_120--Hb_000968_060 Hb_009078_020 Hb_009078_020 Hb_003849_120--Hb_009078_020 Hb_011188_010--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_011188_010--Hb_001059_060 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_000230_530 Hb_000230_530 Hb_002010_090--Hb_000230_530 Hb_006816_010 Hb_006816_010 Hb_002010_090--Hb_006816_010 Hb_002010_090--Hb_000094_150 Hb_000256_160 Hb_000256_160 Hb_002010_090--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_002010_090--Hb_000510_190 Hb_002010_090--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13648 6.66521 12.1338 7.68557 4.2528 1.22558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16693 1.65826 0.110513 6.99083 6.21053

CAGE analysis