Hb_086703_010

Information

Type -
Description -
Location Contig86703: 166-1625
Sequence    

Annotation

kegg
ID rcu:RCOM_1581530
description hypothetical protein
nr
ID XP_012090158.1
description PREDICTED: F-box protein At5g52880 [Jatropha curcas]
swissprot
ID Q9FLX3
description F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1
trembl
ID B9RIQ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61038: 474-978
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086703_010 0.0 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
2 Hb_000771_100 0.0835586752 - - Os06g0527300 [Oryza sativa Japonica Group]
3 Hb_003043_070 0.0934918564 - - -
4 Hb_000155_180 0.0969135435 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
5 Hb_001269_320 0.0972486049 - - 40S ribosomal protein S12A [Hevea brasiliensis]
6 Hb_003011_040 0.0976990811 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
7 Hb_003405_060 0.0978138016 - - -
8 Hb_004502_020 0.0997391936 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
9 Hb_000840_190 0.104032248 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
10 Hb_014834_140 0.1065109572 - - Uncharacterized protein TCM_015942 [Theobroma cacao]
11 Hb_002272_260 0.1068834396 - - -
12 Hb_000505_140 0.1098621639 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
13 Hb_007441_270 0.1140485901 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
14 Hb_000003_730 0.1173443641 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
15 Hb_007432_080 0.1197461281 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
16 Hb_001279_070 0.1197938931 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
17 Hb_032202_090 0.1219391189 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
18 Hb_000010_210 0.1224141663 - - PREDICTED: centromere protein X [Jatropha curcas]
19 Hb_000365_380 0.1239419976 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009554_010 0.1241940938 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]

Gene co-expression network

sample Hb_086703_010 Hb_086703_010 Hb_000771_100 Hb_000771_100 Hb_086703_010--Hb_000771_100 Hb_003043_070 Hb_003043_070 Hb_086703_010--Hb_003043_070 Hb_000155_180 Hb_000155_180 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_002272_260 Hb_002272_260 Hb_000771_100--Hb_002272_260 Hb_000771_100--Hb_000155_180 Hb_000347_340 Hb_000347_340 Hb_000771_100--Hb_000347_340 Hb_000620_080 Hb_000620_080 Hb_000771_100--Hb_000620_080 Hb_000676_290 Hb_000676_290 Hb_000771_100--Hb_000676_290 Hb_003043_070--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_003043_070--Hb_000505_140 Hb_004502_020 Hb_004502_020 Hb_003043_070--Hb_004502_020 Hb_003043_070--Hb_002272_260 Hb_000003_730 Hb_000003_730 Hb_003043_070--Hb_000003_730 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000155_180--Hb_003011_040 Hb_000155_180--Hb_004502_020 Hb_000155_180--Hb_002272_260 Hb_003266_050 Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_001269_320--Hb_003011_040 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_004223_220 Hb_004223_220 Hb_003011_040--Hb_004223_220 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_014834_140 Hb_014834_140 Hb_003405_060--Hb_014834_140 Hb_003405_060--Hb_004502_020 Hb_003405_060--Hb_000155_180 Hb_029888_020 Hb_029888_020 Hb_003405_060--Hb_029888_020 Hb_004807_060 Hb_004807_060 Hb_003405_060--Hb_004807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09186 1.63492 1.51813 4.78524 4.16399 9.94719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2875 11.622 2.13528 2.33955 1.13352

CAGE analysis