Hb_087008_010

Information

Type -
Description -
Location Contig87008: 4-657
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0000166
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087008_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_134312_010 0.0247414443 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
3 Hb_004640_040 0.039110229 - - -
4 Hb_000189_060 0.2248381897 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
5 Hb_000513_080 0.2325706772 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
6 Hb_005892_070 0.268477323 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
7 Hb_000123_100 0.2779258425 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
8 Hb_059301_010 0.3202197687 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_000038_160 0.3394216726 - - putative gag protein [Coffea canephora]
10 Hb_140049_070 0.3394706705 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005867_010 0.3395835615 - - -
12 Hb_002805_320 0.3396843963 - - -
13 Hb_001364_020 0.3401591485 - - -
14 Hb_002163_060 0.3406026205 - - -
15 Hb_000905_070 0.3544269405 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
16 Hb_027393_020 0.3555086622 - - -
17 Hb_000525_060 0.3560268002 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
18 Hb_004324_380 0.3590237292 - - -
19 Hb_000375_380 0.3601031201 - - -
20 Hb_011978_010 0.3602162153 - - hypothetical protein JCGZ_03852 [Jatropha curcas]

Gene co-expression network

sample Hb_087008_010 Hb_087008_010 Hb_134312_010 Hb_134312_010 Hb_087008_010--Hb_134312_010 Hb_004640_040 Hb_004640_040 Hb_087008_010--Hb_004640_040 Hb_000189_060 Hb_000189_060 Hb_087008_010--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_087008_010--Hb_000513_080 Hb_005892_070 Hb_005892_070 Hb_087008_010--Hb_005892_070 Hb_000123_100 Hb_000123_100 Hb_087008_010--Hb_000123_100 Hb_134312_010--Hb_004640_040 Hb_134312_010--Hb_000189_060 Hb_134312_010--Hb_000513_080 Hb_134312_010--Hb_000123_100 Hb_134312_010--Hb_005892_070 Hb_004640_040--Hb_000189_060 Hb_004640_040--Hb_000513_080 Hb_004640_040--Hb_000123_100 Hb_004640_040--Hb_005892_070 Hb_000189_060--Hb_000513_080 Hb_071379_010 Hb_071379_010 Hb_000189_060--Hb_071379_010 Hb_005743_090 Hb_005743_090 Hb_000189_060--Hb_005743_090 Hb_000513_080--Hb_071379_010 Hb_000513_080--Hb_000123_100 Hb_000905_070 Hb_000905_070 Hb_005892_070--Hb_000905_070 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_000200_060 Hb_000200_060 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480 Hb_113823_010 Hb_113823_010 Hb_000123_100--Hb_113823_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_000123_100--Hb_160233_020 Hb_004800_050 Hb_004800_050 Hb_000123_100--Hb_004800_050 Hb_001214_170 Hb_001214_170 Hb_000123_100--Hb_001214_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279502 0 0.206059 0 0.487585 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis