Hb_087203_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig87203: 7509-8845
Sequence    

Annotation

kegg
ID pxb:103963821
description NAC domain-containing protein 68-like
nr
ID XP_009374955.1
description PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
swissprot
ID D2SMN4
description NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=3 SV=1
trembl
ID B9HNX9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087203_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Pyrus x bretschneideri]
2 Hb_132384_010 0.231498506 - - hypothetical protein VITISV_018559 [Vitis vinifera]
3 Hb_012034_010 0.2911808695 - - -
4 Hb_011242_020 0.3157835506 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_008453_130 0.3171211684 - - hypothetical protein JCGZ_08179 [Jatropha curcas]
6 Hb_002493_010 0.3232265466 - - -
7 Hb_033623_040 0.3327930751 - - JHL22C18.10 [Jatropha curcas]
8 Hb_001546_160 0.3392559912 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_170156_010 0.3430778578 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000710_090 0.3432270271 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
11 Hb_053079_010 0.3511696028 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_133047_020 0.3656022015 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
13 Hb_001671_090 0.3663225524 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004195_220 0.3683744178 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
15 Hb_005466_010 0.3742588281 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
16 Hb_003436_030 0.3796576815 - - plant origin recognition complex subunit, putative [Ricinus communis]
17 Hb_000475_050 0.3797405525 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_143714_010 0.3798308326 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Populus euphratica]
19 Hb_151320_010 0.3851275307 - - -
20 Hb_000454_040 0.3853920432 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]

Gene co-expression network

sample Hb_087203_010 Hb_087203_010 Hb_132384_010 Hb_132384_010 Hb_087203_010--Hb_132384_010 Hb_012034_010 Hb_012034_010 Hb_087203_010--Hb_012034_010 Hb_011242_020 Hb_011242_020 Hb_087203_010--Hb_011242_020 Hb_008453_130 Hb_008453_130 Hb_087203_010--Hb_008453_130 Hb_002493_010 Hb_002493_010 Hb_087203_010--Hb_002493_010 Hb_033623_040 Hb_033623_040 Hb_087203_010--Hb_033623_040 Hb_132384_010--Hb_033623_040 Hb_004195_220 Hb_004195_220 Hb_132384_010--Hb_004195_220 Hb_132384_010--Hb_002493_010 Hb_151320_010 Hb_151320_010 Hb_132384_010--Hb_151320_010 Hb_132384_010--Hb_011242_020 Hb_139576_010 Hb_139576_010 Hb_012034_010--Hb_139576_010 Hb_166124_010 Hb_166124_010 Hb_012034_010--Hb_166124_010 Hb_000159_020 Hb_000159_020 Hb_012034_010--Hb_000159_020 Hb_062273_010 Hb_062273_010 Hb_012034_010--Hb_062273_010 Hb_034455_010 Hb_034455_010 Hb_012034_010--Hb_034455_010 Hb_006816_520 Hb_006816_520 Hb_011242_020--Hb_006816_520 Hb_000613_230 Hb_000613_230 Hb_011242_020--Hb_000613_230 Hb_003020_060 Hb_003020_060 Hb_011242_020--Hb_003020_060 Hb_011242_020--Hb_002493_010 Hb_001546_160 Hb_001546_160 Hb_008453_130--Hb_001546_160 Hb_000710_090 Hb_000710_090 Hb_008453_130--Hb_000710_090 Hb_000025_610 Hb_000025_610 Hb_008453_130--Hb_000025_610 Hb_000413_290 Hb_000413_290 Hb_008453_130--Hb_000413_290 Hb_143714_010 Hb_143714_010 Hb_008453_130--Hb_143714_010 Hb_002493_010--Hb_033623_040 Hb_002122_020 Hb_002122_020 Hb_002493_010--Hb_002122_020 Hb_001300_250 Hb_001300_250 Hb_002493_010--Hb_001300_250 Hb_138585_020 Hb_138585_020 Hb_002493_010--Hb_138585_020 Hb_088410_010 Hb_088410_010 Hb_002493_010--Hb_088410_010 Hb_033623_040--Hb_002122_020 Hb_017184_010 Hb_017184_010 Hb_033623_040--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_033623_040--Hb_001952_080 Hb_004989_010 Hb_004989_010 Hb_033623_040--Hb_004989_010 Hb_039316_010 Hb_039316_010 Hb_033623_040--Hb_039316_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0202827 0.0203111 0.0312012 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0674765 0 0.0750261

CAGE analysis