Hb_087221_010

Information

Type -
Description -
Location Contig87221: 2656-2985
Sequence    

Annotation

kegg
ID cic:CICLE_v10029524mg
description hypothetical protein
nr
ID KDO39741.1
description hypothetical protein CISIN_1g033698mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DMC2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033698mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087221_010 0.0 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
2 Hb_012384_050 0.1812141803 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
3 Hb_010770_010 0.2185359349 - - -
4 Hb_176844_010 0.2299647503 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_073212_010 0.2482167028 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_020549_010 0.2488166652 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
7 Hb_000733_040 0.2537692002 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
8 Hb_129067_010 0.2591182218 - - Cytochrome P450 superfamily protein [Theobroma cacao]
9 Hb_000046_410 0.2609948461 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
10 Hb_000815_100 0.2701997035 - - -
11 Hb_000815_140 0.270711213 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000028_630 0.2783863552 - - PIN-like protein, partial [Selaginella apoda]
13 Hb_089140_060 0.2847650207 - - Uncharacterized protein TCM_037529 [Theobroma cacao]
14 Hb_000313_320 0.2857326348 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
15 Hb_178389_010 0.2874536241 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
16 Hb_000605_010 0.2888280526 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
17 Hb_013877_020 0.2892997864 - - Cytochrome P450 [Theobroma cacao]
18 Hb_068347_010 0.2898197997 - - -
19 Hb_034667_020 0.2907298873 - - conserved hypothetical protein [Ricinus communis]
20 Hb_123104_010 0.292174265 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_087221_010 Hb_087221_010 Hb_012384_050 Hb_012384_050 Hb_087221_010--Hb_012384_050 Hb_010770_010 Hb_010770_010 Hb_087221_010--Hb_010770_010 Hb_176844_010 Hb_176844_010 Hb_087221_010--Hb_176844_010 Hb_073212_010 Hb_073212_010 Hb_087221_010--Hb_073212_010 Hb_020549_010 Hb_020549_010 Hb_087221_010--Hb_020549_010 Hb_000733_040 Hb_000733_040 Hb_087221_010--Hb_000733_040 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_006615_100 Hb_006615_100 Hb_012384_050--Hb_006615_100 Hb_003064_030 Hb_003064_030 Hb_012384_050--Hb_003064_030 Hb_000815_140 Hb_000815_140 Hb_012384_050--Hb_000815_140 Hb_010770_010--Hb_176844_010 Hb_010770_010--Hb_012384_050 Hb_010770_010--Hb_073212_010 Hb_007382_040 Hb_007382_040 Hb_010770_010--Hb_007382_040 Hb_000046_410 Hb_000046_410 Hb_010770_010--Hb_000046_410 Hb_176844_010--Hb_000815_140 Hb_176844_010--Hb_000046_410 Hb_013877_020 Hb_013877_020 Hb_176844_010--Hb_013877_020 Hb_176844_010--Hb_012384_050 Hb_088542_010 Hb_088542_010 Hb_073212_010--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_073212_010--Hb_004007_150 Hb_000605_010 Hb_000605_010 Hb_073212_010--Hb_000605_010 Hb_001691_050 Hb_001691_050 Hb_073212_010--Hb_001691_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010 Hb_000982_150 Hb_000982_150 Hb_020549_010--Hb_000982_150 Hb_001673_030 Hb_001673_030 Hb_020549_010--Hb_001673_030 Hb_001277_410 Hb_001277_410 Hb_020549_010--Hb_001277_410 Hb_020549_010--Hb_013877_020 Hb_001589_070 Hb_001589_070 Hb_020549_010--Hb_001589_070 Hb_129067_010 Hb_129067_010 Hb_000733_040--Hb_129067_010 Hb_000733_040--Hb_088542_010 Hb_089140_060 Hb_089140_060 Hb_000733_040--Hb_089140_060 Hb_000733_040--Hb_073212_010 Hb_040506_010 Hb_040506_010 Hb_000733_040--Hb_040506_010 Hb_000733_040--Hb_001691_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17787.1 1595.03 2844.44 230.82 2145.3 4104.18
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.793 160.199 340.06 902.648 936.019

CAGE analysis