Hb_087314_010

Information

Type -
Description -
Location Contig87314: 6428-7378
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61219: 6600-7174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087314_010 0.0 - - -
2 Hb_048987_020 0.0943478643 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
3 Hb_107495_060 0.0967401823 - - Cell division protein kinase, putative [Ricinus communis]
4 Hb_072670_010 0.1002829098 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
5 Hb_180695_010 0.100727417 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
6 Hb_006721_060 0.1272374085 - - RnaseH (mitochondrion) [Malus domestica]
7 Hb_029576_070 0.1304830281 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_004899_380 0.135224497 - - conserved hypothetical protein [Ricinus communis]
9 Hb_057018_010 0.1360181702 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
10 Hb_000172_310 0.1452294072 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
11 Hb_000635_190 0.1452338872 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
12 Hb_019733_020 0.1465389461 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
13 Hb_000373_260 0.1483735351 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
14 Hb_010926_020 0.1485058806 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
15 Hb_033772_040 0.1499121854 - - conserved hypothetical protein [Ricinus communis]
16 Hb_071433_010 0.152198759 - - lipid binding protein, putative [Ricinus communis]
17 Hb_011355_020 0.1535190037 - - extensin, proline-rich protein, putative [Ricinus communis]
18 Hb_004474_020 0.1537075026 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_096878_010 0.1544361195 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
20 Hb_005214_050 0.1550233516 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]

Gene co-expression network

sample Hb_087314_010 Hb_087314_010 Hb_048987_020 Hb_048987_020 Hb_087314_010--Hb_048987_020 Hb_107495_060 Hb_107495_060 Hb_087314_010--Hb_107495_060 Hb_072670_010 Hb_072670_010 Hb_087314_010--Hb_072670_010 Hb_180695_010 Hb_180695_010 Hb_087314_010--Hb_180695_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_004899_380 Hb_004899_380 Hb_048987_020--Hb_004899_380 Hb_004474_020 Hb_004474_020 Hb_048987_020--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_048987_020--Hb_180695_010 Hb_107495_060--Hb_072670_010 Hb_000373_260 Hb_000373_260 Hb_107495_060--Hb_000373_260 Hb_107495_060--Hb_180695_010 Hb_005736_010 Hb_005736_010 Hb_107495_060--Hb_005736_010 Hb_033772_040 Hb_033772_040 Hb_107495_060--Hb_033772_040 Hb_010926_020 Hb_010926_020 Hb_072670_010--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_072670_010--Hb_057018_010 Hb_072670_010--Hb_005736_010 Hb_148914_020 Hb_148914_020 Hb_072670_010--Hb_148914_020 Hb_015934_100 Hb_015934_100 Hb_180695_010--Hb_015934_100 Hb_005916_040 Hb_005916_040 Hb_180695_010--Hb_005916_040 Hb_180695_010--Hb_033772_040 Hb_000635_190 Hb_000635_190 Hb_006721_060--Hb_000635_190 Hb_096878_010 Hb_096878_010 Hb_006721_060--Hb_096878_010 Hb_004096_140 Hb_004096_140 Hb_006721_060--Hb_004096_140 Hb_003050_170 Hb_003050_170 Hb_006721_060--Hb_003050_170 Hb_000172_310 Hb_000172_310 Hb_006721_060--Hb_000172_310 Hb_000060_080 Hb_000060_080 Hb_006721_060--Hb_000060_080 Hb_002597_030 Hb_002597_030 Hb_029576_070--Hb_002597_030 Hb_017549_010 Hb_017549_010 Hb_029576_070--Hb_017549_010 Hb_000120_600 Hb_000120_600 Hb_029576_070--Hb_000120_600 Hb_001856_130 Hb_001856_130 Hb_029576_070--Hb_001856_130 Hb_001677_190 Hb_001677_190 Hb_029576_070--Hb_001677_190 Hb_011355_020 Hb_011355_020 Hb_029576_070--Hb_011355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.29023 0.425124 1.17287 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11138 0

CAGE analysis