Hb_087599_010

Information

Type -
Description -
Location Contig87599: 3088-4423
Sequence    

Annotation

kegg
ID sot:102605816
description tropinone reductase homolog
nr
ID XP_006341200.1
description PREDICTED: tropinone reductase homolog [Solanum tuberosum]
swissprot
ID Q9LHT0
description Tropinone reductase homolog At5g06060 OS=Arabidopsis thaliana GN=At5g06060 PE=2 SV=1
trembl
ID A0A067EEQ5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034468mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61260: 3819-4372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087599_010 0.0 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
2 Hb_000694_080 0.0526739159 - - phosphoribulose kinase, putative [Ricinus communis]
3 Hb_003777_080 0.0603247778 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
4 Hb_002762_050 0.067956312 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
5 Hb_000185_010 0.0699471418 - - Alliin lyase precursor, putative [Ricinus communis]
6 Hb_002093_020 0.0729224164 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
7 Hb_153258_040 0.0799081317 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
8 Hb_005063_030 0.0800762206 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_001564_120 0.0812628951 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
10 Hb_007477_060 0.08132964 - - unknown [Medicago truncatula]
11 Hb_156093_010 0.0814913939 - - hypothetical protein RCOM_0504250 [Ricinus communis]
12 Hb_000017_210 0.0824211251 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
13 Hb_000101_330 0.0827524429 - - -
14 Hb_000008_160 0.0830565478 - - carboxy-lyase, putative [Ricinus communis]
15 Hb_001975_100 0.0857842478 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
16 Hb_000069_760 0.0867093273 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
17 Hb_003536_020 0.0868686777 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
18 Hb_000012_370 0.0870148291 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000482_030 0.0888592944 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]
20 Hb_001751_050 0.0896693063 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_087599_010 Hb_087599_010 Hb_000694_080 Hb_000694_080 Hb_087599_010--Hb_000694_080 Hb_003777_080 Hb_003777_080 Hb_087599_010--Hb_003777_080 Hb_002762_050 Hb_002762_050 Hb_087599_010--Hb_002762_050 Hb_000185_010 Hb_000185_010 Hb_087599_010--Hb_000185_010 Hb_002093_020 Hb_002093_020 Hb_087599_010--Hb_002093_020 Hb_153258_040 Hb_153258_040 Hb_087599_010--Hb_153258_040 Hb_000017_210 Hb_000017_210 Hb_000694_080--Hb_000017_210 Hb_000482_030 Hb_000482_030 Hb_000694_080--Hb_000482_030 Hb_007426_070 Hb_007426_070 Hb_000694_080--Hb_007426_070 Hb_000483_440 Hb_000483_440 Hb_000694_080--Hb_000483_440 Hb_000012_370 Hb_000012_370 Hb_000694_080--Hb_000012_370 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_003777_080--Hb_153258_040 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_004970_060 Hb_004970_060 Hb_003777_080--Hb_004970_060 Hb_156093_010 Hb_156093_010 Hb_003777_080--Hb_156093_010 Hb_012807_030 Hb_012807_030 Hb_002762_050--Hb_012807_030 Hb_000008_160 Hb_000008_160 Hb_002762_050--Hb_000008_160 Hb_002762_050--Hb_000694_080 Hb_002762_050--Hb_003777_080 Hb_002762_050--Hb_156093_010 Hb_000069_760 Hb_000069_760 Hb_000185_010--Hb_000069_760 Hb_000185_010--Hb_000012_370 Hb_000185_010--Hb_000008_160 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_001751_050 Hb_001751_050 Hb_002093_020--Hb_001751_050 Hb_002093_020--Hb_000008_160 Hb_001766_160 Hb_001766_160 Hb_002093_020--Hb_001766_160 Hb_000531_100 Hb_000531_100 Hb_002093_020--Hb_000531_100 Hb_005276_080 Hb_005276_080 Hb_002093_020--Hb_005276_080 Hb_001946_120 Hb_001946_120 Hb_153258_040--Hb_001946_120 Hb_044478_010 Hb_044478_010 Hb_153258_040--Hb_044478_010 Hb_153258_040--Hb_004970_060 Hb_001999_230 Hb_001999_230 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.79674 25.5037 9.8385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0840811 0 0 1.83098 47.4181

CAGE analysis