Hb_087717_010

Information

Type -
Description -
Location Contig87717: 2-187
Sequence    

Annotation

kegg
ID rcu:RCOM_0838210
description hypothetical protein
nr
ID KDP44746.1
description hypothetical protein JCGZ_01246 [Jatropha curcas]
swissprot
ID Q9LY46
description Protein ESKIMO 1 OS=Arabidopsis thaliana GN=ESK1 PE=1 SV=1
trembl
ID A0A067L8I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01246 PE=4 SV=1
Gene Ontology
ID GO:0050826
description protein eskimo 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087717_010 0.0 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
2 Hb_002078_070 0.0797276422 - - conserved hypothetical protein [Ricinus communis]
3 Hb_013394_110 0.0877617922 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004724_280 0.097479839 - - conserved hypothetical protein [Ricinus communis]
5 Hb_164853_010 0.0987718194 - - Patatin precursor, putative [Ricinus communis]
6 Hb_003420_010 0.1008847322 - - zinc finger protein, putative [Ricinus communis]
7 Hb_012675_010 0.1074561067 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001123_330 0.1107059391 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_105377_010 0.1112722857 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
10 Hb_135592_010 0.112173109 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000336_010 0.1154223547 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
12 Hb_003055_160 0.1187290017 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
13 Hb_000009_100 0.1193488295 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
14 Hb_000141_050 0.1229603465 - - hypothetical protein POPTR_0001s00460g [Populus trichocarpa]
15 Hb_002383_010 0.1238641959 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000005_150 0.1238692155 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
17 Hb_077165_010 0.1238799672 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012758_020 0.1239348244 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_005858_010 0.1240140545 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
20 Hb_011515_020 0.124169427 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]

Gene co-expression network

sample Hb_087717_010 Hb_087717_010 Hb_002078_070 Hb_002078_070 Hb_087717_010--Hb_002078_070 Hb_013394_110 Hb_013394_110 Hb_087717_010--Hb_013394_110 Hb_004724_280 Hb_004724_280 Hb_087717_010--Hb_004724_280 Hb_164853_010 Hb_164853_010 Hb_087717_010--Hb_164853_010 Hb_003420_010 Hb_003420_010 Hb_087717_010--Hb_003420_010 Hb_012675_010 Hb_012675_010 Hb_087717_010--Hb_012675_010 Hb_002078_070--Hb_004724_280 Hb_000336_010 Hb_000336_010 Hb_002078_070--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_002078_070--Hb_105377_010 Hb_002078_070--Hb_003420_010 Hb_001123_330 Hb_001123_330 Hb_002078_070--Hb_001123_330 Hb_005858_010 Hb_005858_010 Hb_013394_110--Hb_005858_010 Hb_012758_020 Hb_012758_020 Hb_013394_110--Hb_012758_020 Hb_000245_010 Hb_000245_010 Hb_013394_110--Hb_000245_010 Hb_002383_010 Hb_002383_010 Hb_013394_110--Hb_002383_010 Hb_000005_150 Hb_000005_150 Hb_013394_110--Hb_000005_150 Hb_001414_070 Hb_001414_070 Hb_013394_110--Hb_001414_070 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_001123_330 Hb_000175_080 Hb_000175_080 Hb_004724_280--Hb_000175_080 Hb_004724_280--Hb_003420_010 Hb_007474_010 Hb_007474_010 Hb_004724_280--Hb_007474_010 Hb_164853_010--Hb_012675_010 Hb_164853_010--Hb_003420_010 Hb_000141_050 Hb_000141_050 Hb_164853_010--Hb_000141_050 Hb_164853_010--Hb_013394_110 Hb_005666_010 Hb_005666_010 Hb_164853_010--Hb_005666_010 Hb_164853_010--Hb_000336_010 Hb_003420_010--Hb_000336_010 Hb_003420_010--Hb_000175_080 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_012675_010--Hb_000141_050 Hb_012675_010--Hb_003420_010 Hb_188742_010 Hb_188742_010 Hb_012675_010--Hb_188742_010 Hb_001158_210 Hb_001158_210 Hb_012675_010--Hb_001158_210 Hb_128935_010 Hb_128935_010 Hb_012675_010--Hb_128935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1123 14.9399 631.613 1072.27 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.85227 21.4222

CAGE analysis