Hb_087749_010

Information

Type -
Description -
Location Contig87749: 552-2061
Sequence    

Annotation

kegg
ID rcu:RCOM_1453640
description hypothetical protein
nr
ID XP_012068613.1
description PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
swissprot
ID Q9NRH1
description Yae1 domain-containing protein 1 OS=Homo sapiens GN=YAE1D1 PE=2 SV=1
trembl
ID B9RGF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61282: 471-2066
cDNA
(Sanger)
(ID:Location)		 001_F07.ab1: 568-2066 , 009_D09.ab1: 749-2066 , 033_B22.ab1: 768-2066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087749_010 0.0 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
2 Hb_000431_070 0.0762533288 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
3 Hb_002613_020 0.0780650843 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
4 Hb_002798_020 0.0833356613 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_007065_010 0.0845445061 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
6 Hb_003025_040 0.0872448335 - - PREDICTED: elongin-A [Jatropha curcas]
7 Hb_033153_060 0.0890054189 - - Transcription elongation factor, putative [Ricinus communis]
8 Hb_002609_200 0.0913102386 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_007576_170 0.0929320692 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004709_010 0.0937518215 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
11 Hb_001279_080 0.0960660298 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
12 Hb_004871_040 0.0963167884 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
13 Hb_004127_020 0.0966237565 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
14 Hb_021576_030 0.0970470756 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
15 Hb_002183_060 0.098816943 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
16 Hb_000808_190 0.0993592889 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
17 Hb_001386_040 0.101001208 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
18 Hb_000789_230 0.1013819786 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
19 Hb_024650_070 0.1015212904 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
20 Hb_017413_010 0.1017475419 - - -

Gene co-expression network

sample Hb_087749_010 Hb_087749_010 Hb_000431_070 Hb_000431_070 Hb_087749_010--Hb_000431_070 Hb_002613_020 Hb_002613_020 Hb_087749_010--Hb_002613_020 Hb_002798_020 Hb_002798_020 Hb_087749_010--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_087749_010--Hb_007065_010 Hb_003025_040 Hb_003025_040 Hb_087749_010--Hb_003025_040 Hb_033153_060 Hb_033153_060 Hb_087749_010--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_000431_070--Hb_007576_170 Hb_000431_070--Hb_002613_020 Hb_000045_310 Hb_000045_310 Hb_000431_070--Hb_000045_310 Hb_001279_080 Hb_001279_080 Hb_000431_070--Hb_001279_080 Hb_002000_140 Hb_002000_140 Hb_000431_070--Hb_002000_140 Hb_002613_020--Hb_007065_010 Hb_000016_080 Hb_000016_080 Hb_002613_020--Hb_000016_080 Hb_002613_020--Hb_007576_170 Hb_002613_020--Hb_033153_060 Hb_002798_020--Hb_007065_010 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_007065_010--Hb_000016_080 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_017413_010 Hb_017413_010 Hb_003025_040--Hb_017413_010 Hb_003025_040--Hb_000789_230 Hb_019762_020 Hb_019762_020 Hb_003025_040--Hb_019762_020 Hb_000373_120 Hb_000373_120 Hb_003025_040--Hb_000373_120 Hb_006846_060 Hb_006846_060 Hb_003025_040--Hb_006846_060 Hb_004459_040 Hb_004459_040 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_033153_060--Hb_007576_170 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_033153_060--Hb_007065_010 Hb_033153_060--Hb_000789_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25596 2.07043 5.33529 8.14385 5.35454 7.74123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6383 17.6082 5.41965 6.17697 8.72679

CAGE analysis