Hb_088144_010

Information

Type -
Description -
Location Contig88144: 10259-14338
Sequence    

Annotation

kegg
ID rcu:RCOM_1565510
description cellulose synthase, putative (EC:2.4.1.12)
nr
ID XP_002514401.1
description cellulose synthase, putative [Ricinus communis]
swissprot
ID Q9SZL9
description Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1
trembl
ID B9RKY2
description Cellulose synthase, putative OS=Ricinus communis GN=RCOM_1565510 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein d4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088144_010 0.0 - - cellulose synthase, putative [Ricinus communis]
2 Hb_002243_080 0.1785844141 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
3 Hb_000720_180 0.2318639784 - - -
4 Hb_000344_060 0.2392821648 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_000707_080 0.2500210176 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
6 Hb_001631_070 0.2511279947 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_000548_040 0.2523190635 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
8 Hb_032006_010 0.2666005277 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_003745_010 0.2789746856 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
10 Hb_001425_120 0.2852416251 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
11 Hb_072912_010 0.2862183117 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
12 Hb_012347_010 0.2934580173 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
13 Hb_027892_010 0.293721305 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
14 Hb_000130_370 0.2974004178 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
15 Hb_003018_180 0.2988750507 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
16 Hb_004705_030 0.2991436415 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004545_150 0.2992261031 - - PREDICTED: paramyosin [Jatropha curcas]
18 Hb_000784_130 0.3002428376 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
19 Hb_000957_040 0.3005103303 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
20 Hb_000762_020 0.3014229407 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]

Gene co-expression network

sample Hb_088144_010 Hb_088144_010 Hb_002243_080 Hb_002243_080 Hb_088144_010--Hb_002243_080 Hb_000720_180 Hb_000720_180 Hb_088144_010--Hb_000720_180 Hb_000344_060 Hb_000344_060 Hb_088144_010--Hb_000344_060 Hb_000707_080 Hb_000707_080 Hb_088144_010--Hb_000707_080 Hb_001631_070 Hb_001631_070 Hb_088144_010--Hb_001631_070 Hb_000548_040 Hb_000548_040 Hb_088144_010--Hb_000548_040 Hb_075449_050 Hb_075449_050 Hb_002243_080--Hb_075449_050 Hb_004705_030 Hb_004705_030 Hb_002243_080--Hb_004705_030 Hb_002243_080--Hb_000548_040 Hb_002243_080--Hb_001631_070 Hb_027892_010 Hb_027892_010 Hb_002243_080--Hb_027892_010 Hb_003018_180 Hb_003018_180 Hb_000720_180--Hb_003018_180 Hb_004545_150 Hb_004545_150 Hb_000720_180--Hb_004545_150 Hb_029879_080 Hb_029879_080 Hb_000720_180--Hb_029879_080 Hb_000720_180--Hb_001631_070 Hb_002301_020 Hb_002301_020 Hb_000720_180--Hb_002301_020 Hb_003745_010 Hb_003745_010 Hb_000720_180--Hb_003745_010 Hb_000206_220 Hb_000206_220 Hb_000344_060--Hb_000206_220 Hb_000344_060--Hb_000720_180 Hb_019516_040 Hb_019516_040 Hb_000344_060--Hb_019516_040 Hb_032006_010 Hb_032006_010 Hb_000344_060--Hb_032006_010 Hb_000344_060--Hb_002243_080 Hb_000762_020 Hb_000762_020 Hb_000707_080--Hb_000762_020 Hb_000920_140 Hb_000920_140 Hb_000707_080--Hb_000920_140 Hb_001140_160 Hb_001140_160 Hb_000707_080--Hb_001140_160 Hb_000707_080--Hb_001631_070 Hb_000957_040 Hb_000957_040 Hb_000707_080--Hb_000957_040 Hb_012347_010 Hb_012347_010 Hb_000707_080--Hb_012347_010 Hb_010872_060 Hb_010872_060 Hb_001631_070--Hb_010872_060 Hb_001631_070--Hb_000957_040 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_124315_040 Hb_124315_040 Hb_001631_070--Hb_124315_040 Hb_001631_070--Hb_003745_010 Hb_000002_390 Hb_000002_390 Hb_000548_040--Hb_000002_390 Hb_001425_120 Hb_001425_120 Hb_000548_040--Hb_001425_120 Hb_002027_300 Hb_002027_300 Hb_000548_040--Hb_002027_300 Hb_000548_040--Hb_012347_010 Hb_000548_040--Hb_000957_040 Hb_000548_040--Hb_000707_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184045 0 0 0 0.00569084 0.0101984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0257776 0 0.0194365 0 0

CAGE analysis