Hb_088176_010

Information

Type -
Description -
Location Contig88176: 1492-1701
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088176_010 0.0 - - -
2 Hb_001114_230 0.2391904775 - - -
3 Hb_009372_010 0.2549207469 - - -
4 Hb_002086_030 0.2731991 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_000019_140 0.2816762288 - - Light-regulated protein precursor, putative [Ricinus communis]
6 Hb_002805_130 0.2828210189 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000566_190 0.2906017534 - - unnamed protein product [Vitis vinifera]
8 Hb_029393_020 0.2928581989 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
9 Hb_057217_010 0.295402591 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
10 Hb_097433_020 0.2981884286 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_001231_080 0.3008797462 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
12 Hb_004976_060 0.3020964881 - - -
13 Hb_133385_010 0.3052591965 - - -
14 Hb_000869_030 0.3062462185 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR5 isoform X1 [Jatropha curcas]
15 Hb_020178_050 0.3064507444 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
16 Hb_001141_360 0.308116235 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
17 Hb_002367_120 0.3108770202 - - -
18 Hb_118453_010 0.3114689117 - - hypothetical protein VITISV_012360 [Vitis vinifera]
19 Hb_001489_120 0.3131436062 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
20 Hb_000407_060 0.3132028383 - - -

Gene co-expression network

sample Hb_088176_010 Hb_088176_010 Hb_001114_230 Hb_001114_230 Hb_088176_010--Hb_001114_230 Hb_009372_010 Hb_009372_010 Hb_088176_010--Hb_009372_010 Hb_002086_030 Hb_002086_030 Hb_088176_010--Hb_002086_030 Hb_000019_140 Hb_000019_140 Hb_088176_010--Hb_000019_140 Hb_002805_130 Hb_002805_130 Hb_088176_010--Hb_002805_130 Hb_000566_190 Hb_000566_190 Hb_088176_010--Hb_000566_190 Hb_001114_230--Hb_009372_010 Hb_000836_370 Hb_000836_370 Hb_001114_230--Hb_000836_370 Hb_000834_240 Hb_000834_240 Hb_001114_230--Hb_000834_240 Hb_003506_070 Hb_003506_070 Hb_001114_230--Hb_003506_070 Hb_012725_040 Hb_012725_040 Hb_001114_230--Hb_012725_040 Hb_080147_080 Hb_080147_080 Hb_001114_230--Hb_080147_080 Hb_028795_010 Hb_028795_010 Hb_009372_010--Hb_028795_010 Hb_021576_140 Hb_021576_140 Hb_009372_010--Hb_021576_140 Hb_007481_030 Hb_007481_030 Hb_009372_010--Hb_007481_030 Hb_153161_010 Hb_153161_010 Hb_009372_010--Hb_153161_010 Hb_003633_140 Hb_003633_140 Hb_009372_010--Hb_003633_140 Hb_000869_030 Hb_000869_030 Hb_002086_030--Hb_000869_030 Hb_002086_030--Hb_009372_010 Hb_128695_030 Hb_128695_030 Hb_002086_030--Hb_128695_030 Hb_001231_080 Hb_001231_080 Hb_002086_030--Hb_001231_080 Hb_002485_040 Hb_002485_040 Hb_002086_030--Hb_002485_040 Hb_002086_030--Hb_153161_010 Hb_000071_140 Hb_000071_140 Hb_000019_140--Hb_000071_140 Hb_000069_730 Hb_000069_730 Hb_000019_140--Hb_000069_730 Hb_015934_030 Hb_015934_030 Hb_000019_140--Hb_015934_030 Hb_001489_120 Hb_001489_120 Hb_000019_140--Hb_001489_120 Hb_006111_030 Hb_006111_030 Hb_000019_140--Hb_006111_030 Hb_000221_060 Hb_000221_060 Hb_000019_140--Hb_000221_060 Hb_000189_100 Hb_000189_100 Hb_002805_130--Hb_000189_100 Hb_000540_110 Hb_000540_110 Hb_002805_130--Hb_000540_110 Hb_007234_010 Hb_007234_010 Hb_002805_130--Hb_007234_010 Hb_000940_160 Hb_000940_160 Hb_002805_130--Hb_000940_160 Hb_004228_020 Hb_004228_020 Hb_002805_130--Hb_004228_020 Hb_007818_020 Hb_007818_020 Hb_002805_130--Hb_007818_020 Hb_006414_020 Hb_006414_020 Hb_000566_190--Hb_006414_020 Hb_002154_020 Hb_002154_020 Hb_000566_190--Hb_002154_020 Hb_000448_060 Hb_000448_060 Hb_000566_190--Hb_000448_060 Hb_000107_440 Hb_000107_440 Hb_000566_190--Hb_000107_440 Hb_001248_110 Hb_001248_110 Hb_000566_190--Hb_001248_110 Hb_012787_040 Hb_012787_040 Hb_000566_190--Hb_012787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49305 46.4346 15.8064 0 2.62374 26.0085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18151 1.90267 3.19284 5.77848 3.32375

CAGE analysis