Hb_088410_010

Information

Type -
Description -
Location Contig88410: 1633-2365
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005488
description choline chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088410_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002473_140 0.0882118029 - - -
3 Hb_159938_010 0.1734280359 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_002122_020 0.2000876229 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
5 Hb_002869_070 0.2026839659 - - -
6 Hb_050334_010 0.2101334477 - - -
7 Hb_142570_010 0.2127364935 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
8 Hb_001519_210 0.2285057317 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
9 Hb_133047_020 0.2329987607 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
10 Hb_000940_190 0.23827752 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_099723_010 0.2383203748 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
12 Hb_065943_010 0.2393267867 - - -
13 Hb_154997_010 0.2394292248 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
14 Hb_006157_050 0.2405610716 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_032531_010 0.2412435356 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_006933_010 0.2415920487 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_043792_020 0.2514263311 - - Retrotransposon gag protein [Medicago truncatula]
18 Hb_004124_010 0.2547433286 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
19 Hb_106815_010 0.2573762023 - - hypothetical protein, conserved [Eimeria acervulina]
20 Hb_171685_030 0.2635125798 - - URF-1 [Citrullus lanatus]

Gene co-expression network

sample Hb_088410_010 Hb_088410_010 Hb_002473_140 Hb_002473_140 Hb_088410_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_088410_010--Hb_159938_010 Hb_002122_020 Hb_002122_020 Hb_088410_010--Hb_002122_020 Hb_002869_070 Hb_002869_070 Hb_088410_010--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010 Hb_002473_140--Hb_159938_010 Hb_002473_140--Hb_002869_070 Hb_002473_140--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002473_140--Hb_001519_210 Hb_154997_010 Hb_154997_010 Hb_002473_140--Hb_154997_010 Hb_043792_020 Hb_043792_020 Hb_159938_010--Hb_043792_020 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210 Hb_033623_040 Hb_033623_040 Hb_002122_020--Hb_033623_040 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010 Hb_011478_010 Hb_011478_010 Hb_002122_020--Hb_011478_010 Hb_002869_070--Hb_050334_010 Hb_006933_010 Hb_006933_010 Hb_002869_070--Hb_006933_010 Hb_002869_070--Hb_154997_010 Hb_004124_010 Hb_004124_010 Hb_002869_070--Hb_004124_010 Hb_002869_070--Hb_006157_050 Hb_032531_010 Hb_032531_010 Hb_050334_010--Hb_032531_010 Hb_050334_010--Hb_001519_210 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_050334_010--Hb_065943_010 Hb_142570_010--Hb_002473_140 Hb_142570_010--Hb_159938_010 Hb_041813_050 Hb_041813_050 Hb_142570_010--Hb_041813_050 Hb_142570_010--Hb_001519_210 Hb_142570_010--Hb_043792_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.185873 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.614871 0.265732 1.34529

CAGE analysis