Hb_088428_010

Information

Type -
Description -
Location Contig88428: 6-266
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09420g
description POPTRDRAFT_751320; hypothetical protein
nr
ID XP_012087208.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
swissprot
ID Q8RXD3
description E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1
trembl
ID A0A067JNH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20588 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase cip8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088428_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
2 Hb_121467_010 0.0971466987 - - tubulin-specific chaperone E, putative [Ricinus communis]
3 Hb_142751_010 0.1505133234 - - conserved hypothetical protein [Ricinus communis]
4 Hb_178041_010 0.1505171347 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
5 Hb_130134_030 0.1505852771 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
6 Hb_009119_030 0.1603826843 - - GMFP4 [Medicago truncatula]
7 Hb_000486_060 0.1616854982 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
8 Hb_001767_120 0.166755138 - - -
9 Hb_004935_080 0.180607362 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
10 Hb_070469_010 0.1820144163 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
11 Hb_001623_300 0.1824324498 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
12 Hb_002742_070 0.1831378503 - - PREDICTED: villin-4-like [Jatropha curcas]
13 Hb_000062_060 0.1862325849 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
14 Hb_037793_010 0.1865302582 - - PREDICTED: microtubule-associated protein 70-2-like [Jatropha curcas]
15 Hb_130134_020 0.1868008211 - - -
16 Hb_051437_010 0.1872950498 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
17 Hb_002411_130 0.1889508012 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
18 Hb_000130_190 0.1906377438 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_010964_020 0.1912635074 - - RNA helicase [Arabidopsis thaliana]
20 Hb_070385_010 0.1913817624 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]

Gene co-expression network

sample Hb_088428_010 Hb_088428_010 Hb_121467_010 Hb_121467_010 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_178041_010 Hb_178041_010 Hb_088428_010--Hb_178041_010 Hb_130134_030 Hb_130134_030 Hb_088428_010--Hb_130134_030 Hb_009119_030 Hb_009119_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_121467_010--Hb_009119_030 Hb_002411_130 Hb_002411_130 Hb_121467_010--Hb_002411_130 Hb_001767_120 Hb_001767_120 Hb_121467_010--Hb_001767_120 Hb_070469_010 Hb_070469_010 Hb_121467_010--Hb_070469_010 Hb_015354_010 Hb_015354_010 Hb_142751_010--Hb_015354_010 Hb_000429_250 Hb_000429_250 Hb_142751_010--Hb_000429_250 Hb_001623_300 Hb_001623_300 Hb_142751_010--Hb_001623_300 Hb_142751_010--Hb_001767_120 Hb_001623_290 Hb_001623_290 Hb_142751_010--Hb_001623_290 Hb_002742_070 Hb_002742_070 Hb_178041_010--Hb_002742_070 Hb_051437_010 Hb_051437_010 Hb_178041_010--Hb_051437_010 Hb_178041_010--Hb_130134_030 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_130134_020 Hb_130134_020 Hb_130134_030--Hb_130134_020 Hb_003376_070 Hb_003376_070 Hb_130134_030--Hb_003376_070 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_009119_030--Hb_002411_130 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_000486_060--Hb_171788_010 Hb_002903_080 Hb_002903_080 Hb_000486_060--Hb_002903_080 Hb_000198_070 Hb_000198_070 Hb_000486_060--Hb_000198_070 Hb_000486_060--Hb_002815_060 Hb_005714_130 Hb_005714_130 Hb_000486_060--Hb_005714_130 Hb_083043_010 Hb_083043_010 Hb_000486_060--Hb_083043_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3085 4.50357 7.41237 20.4932 15.4989 43.6383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74208 2.17062 1.70582 5.69019 1.83396

CAGE analysis