Hb_088500_010

Information

Type -
Description -
Location Contig88500: 50-925
Sequence    

Annotation

kegg
ID rcu:RCOM_0038360
description 2-deoxyglucose-6-phosphate phosphatase, putative
nr
ID XP_012081603.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
swissprot
ID Q680K2
description Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana GN=At4g39970 PE=2 SV=1
trembl
ID A0A067K0I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18641 PE=4 SV=1
Gene Ontology
ID GO:0044434
description haloacid dehalogenase-like hydrolase domain-containing protein at4g39970

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088500_010 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
2 Hb_000059_270 0.1017418914 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
3 Hb_009178_070 0.1156418265 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
4 Hb_002053_010 0.1222084614 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_001124_190 0.1238955251 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001124_180 0.12431363 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
7 Hb_000110_230 0.1281846815 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
8 Hb_001946_160 0.1325909429 - - putative chaperon P13.9 [Castanea sativa]
9 Hb_005725_220 0.1340650898 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
10 Hb_001227_090 0.1361798017 - - peroxiredoxin, putative [Ricinus communis]
11 Hb_002150_130 0.1362648855 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
12 Hb_029920_030 0.1388507879 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
13 Hb_163950_070 0.1390594399 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
14 Hb_000816_200 0.1390916396 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
15 Hb_000164_140 0.1404836231 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_004348_040 0.1406783006 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
17 Hb_006907_060 0.1408570974 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000175_050 0.1422713097 - - -
19 Hb_000317_260 0.1424923572 - - unknown [Populus trichocarpa]
20 Hb_000941_100 0.1425206066 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_088500_010 Hb_088500_010 Hb_000059_270 Hb_000059_270 Hb_088500_010--Hb_000059_270 Hb_009178_070 Hb_009178_070 Hb_088500_010--Hb_009178_070 Hb_002053_010 Hb_002053_010 Hb_088500_010--Hb_002053_010 Hb_001124_190 Hb_001124_190 Hb_088500_010--Hb_001124_190 Hb_001124_180 Hb_001124_180 Hb_088500_010--Hb_001124_180 Hb_000110_230 Hb_000110_230 Hb_088500_010--Hb_000110_230 Hb_006198_130 Hb_006198_130 Hb_000059_270--Hb_006198_130 Hb_000816_200 Hb_000816_200 Hb_000059_270--Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000059_270--Hb_016461_030 Hb_003171_030 Hb_003171_030 Hb_000059_270--Hb_003171_030 Hb_009687_020 Hb_009687_020 Hb_000059_270--Hb_009687_020 Hb_000345_370 Hb_000345_370 Hb_000059_270--Hb_000345_370 Hb_002150_130 Hb_002150_130 Hb_009178_070--Hb_002150_130 Hb_009178_070--Hb_001124_190 Hb_003209_010 Hb_003209_010 Hb_009178_070--Hb_003209_010 Hb_005914_050 Hb_005914_050 Hb_009178_070--Hb_005914_050 Hb_000922_340 Hb_000922_340 Hb_009178_070--Hb_000922_340 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_001124_190--Hb_001124_180 Hb_169209_010 Hb_169209_010 Hb_001124_190--Hb_169209_010 Hb_001124_190--Hb_005914_050 Hb_000042_290 Hb_000042_290 Hb_001124_190--Hb_000042_290 Hb_000676_020 Hb_000676_020 Hb_001124_190--Hb_000676_020 Hb_000176_010 Hb_000176_010 Hb_001124_190--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_000164_140 Hb_000164_140 Hb_000110_230--Hb_000164_140 Hb_000110_230--Hb_005725_220 Hb_029920_030 Hb_029920_030 Hb_000110_230--Hb_029920_030 Hb_000110_230--Hb_000042_290 Hb_005276_010 Hb_005276_010 Hb_000110_230--Hb_005276_010 Hb_036790_120 Hb_036790_120 Hb_000110_230--Hb_036790_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61375 2.79561 17.8604 9.31687 3.86027 1.47546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6209 8.47055 3.29699 4.62199 24.6377

CAGE analysis