Hb_088538_020

Information

Type -
Description -
Location Contig88538: 24836-25051
Sequence    

Annotation

kegg
ID rcu:RCOM_0560880
description hypothetical protein
nr
ID KDP32886.1
description hypothetical protein JCGZ_12178 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088538_020 0.0 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
2 Hb_100873_030 0.216630986 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
3 Hb_000141_240 0.2298946208 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
4 Hb_154340_010 0.235311753 - - truncated nitrate transporter [Fragaria vesca]
5 Hb_001114_340 0.2369648226 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
6 Hb_042223_010 0.2384332207 - - Protein Z, putative [Ricinus communis]
7 Hb_002522_020 0.244916394 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
8 Hb_000230_320 0.2451913397 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
9 Hb_064885_080 0.2652519426 - - -
10 Hb_156473_010 0.2684081005 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
11 Hb_000995_070 0.2776230917 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
12 Hb_000009_070 0.2898295003 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
13 Hb_000008_180 0.2949166852 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000226_100 0.297316374 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_000042_240 0.2975070631 - - -
16 Hb_000172_570 0.2995902563 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
17 Hb_000184_200 0.3062384891 - - -
18 Hb_018954_010 0.3084231197 - - -
19 Hb_007975_040 0.3116594777 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
20 Hb_060455_010 0.3161272664 - - 50 kDa protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_088538_020 Hb_088538_020 Hb_100873_030 Hb_100873_030 Hb_088538_020--Hb_100873_030 Hb_000141_240 Hb_000141_240 Hb_088538_020--Hb_000141_240 Hb_154340_010 Hb_154340_010 Hb_088538_020--Hb_154340_010 Hb_001114_340 Hb_001114_340 Hb_088538_020--Hb_001114_340 Hb_042223_010 Hb_042223_010 Hb_088538_020--Hb_042223_010 Hb_002522_020 Hb_002522_020 Hb_088538_020--Hb_002522_020 Hb_000995_070 Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_100873_030--Hb_000141_240 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_000141_240--Hb_018954_010 Hb_000172_570 Hb_000172_570 Hb_000141_240--Hb_000172_570 Hb_002073_120 Hb_002073_120 Hb_000141_240--Hb_002073_120 Hb_000141_240--Hb_000009_070 Hb_000141_240--Hb_000995_070 Hb_000638_040 Hb_000638_040 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_154340_010--Hb_000572_050 Hb_000083_040 Hb_000083_040 Hb_154340_010--Hb_000083_040 Hb_064885_080 Hb_064885_080 Hb_001114_340--Hb_064885_080 Hb_001114_340--Hb_000995_070 Hb_010174_070 Hb_010174_070 Hb_001114_340--Hb_010174_070 Hb_001114_340--Hb_100873_030 Hb_001114_340--Hb_042223_010 Hb_000784_040 Hb_000784_040 Hb_001114_340--Hb_000784_040 Hb_042223_010--Hb_156473_010 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_001587_210 Hb_001587_210 Hb_042223_010--Hb_001587_210 Hb_042223_010--Hb_000784_040 Hb_002522_020--Hb_001114_340 Hb_010417_010 Hb_010417_010 Hb_002522_020--Hb_010417_010 Hb_002522_020--Hb_000141_240 Hb_002522_020--Hb_002073_120 Hb_002522_020--Hb_000172_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.613534 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15849 0.845152 21.2365 0.396361 0

CAGE analysis