Hb_088584_010

Information

Type -
Description -
Location Contig88584: 384-1426
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08470g
description POPTRDRAFT_904069; hypothetical protein
nr
ID XP_002323447.2
description hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
swissprot
ID Q8RWU3
description Protein REVEILLE 8 OS=Arabidopsis thaliana GN=RVE8 PE=2 SV=1
trembl
ID B9IIY6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08470g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein reveille 8-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088584_010 0.0 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
2 Hb_006846_170 0.0822024014 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
3 Hb_017214_040 0.0840239205 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
4 Hb_002249_020 0.0860915713 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
5 Hb_000069_610 0.0913573757 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
6 Hb_000179_190 0.0939674603 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_111552_010 0.0956731088 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
8 Hb_001863_360 0.0969941424 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
9 Hb_023344_140 0.0970132775 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
10 Hb_033152_090 0.0974799992 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
11 Hb_000045_160 0.0988859705 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
12 Hb_000212_420 0.0990121062 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
13 Hb_004774_090 0.0995170371 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
14 Hb_002272_240 0.099914643 - - catalytic, putative [Ricinus communis]
15 Hb_005214_140 0.1012282808 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
16 Hb_000258_420 0.1018574846 - - sucrose transporter 2A [Hevea brasiliensis]
17 Hb_000788_030 0.1018912866 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_000300_030 0.1039675325 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
19 Hb_006120_050 0.1044592554 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
20 Hb_003408_060 0.1047475981 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_088584_010 Hb_088584_010 Hb_006846_170 Hb_006846_170 Hb_088584_010--Hb_006846_170 Hb_017214_040 Hb_017214_040 Hb_088584_010--Hb_017214_040 Hb_002249_020 Hb_002249_020 Hb_088584_010--Hb_002249_020 Hb_000069_610 Hb_000069_610 Hb_088584_010--Hb_000069_610 Hb_000179_190 Hb_000179_190 Hb_088584_010--Hb_000179_190 Hb_111552_010 Hb_111552_010 Hb_088584_010--Hb_111552_010 Hb_006846_170--Hb_002249_020 Hb_000788_030 Hb_000788_030 Hb_006846_170--Hb_000788_030 Hb_003228_100 Hb_003228_100 Hb_006846_170--Hb_003228_100 Hb_000975_210 Hb_000975_210 Hb_006846_170--Hb_000975_210 Hb_023344_140 Hb_023344_140 Hb_006846_170--Hb_023344_140 Hb_017214_040--Hb_000179_190 Hb_008387_010 Hb_008387_010 Hb_017214_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_017214_040--Hb_023226_070 Hb_000445_060 Hb_000445_060 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_000110_350 Hb_000110_350 Hb_017214_040--Hb_000110_350 Hb_000640_190 Hb_000640_190 Hb_002249_020--Hb_000640_190 Hb_003449_100 Hb_003449_100 Hb_002249_020--Hb_003449_100 Hb_003925_060 Hb_003925_060 Hb_002249_020--Hb_003925_060 Hb_006022_010 Hb_006022_010 Hb_002249_020--Hb_006022_010 Hb_002249_020--Hb_003228_100 Hb_000069_610--Hb_000788_030 Hb_000069_610--Hb_006846_170 Hb_004705_160 Hb_004705_160 Hb_000069_610--Hb_004705_160 Hb_001478_040 Hb_001478_040 Hb_000069_610--Hb_001478_040 Hb_000748_090 Hb_000748_090 Hb_000069_610--Hb_000748_090 Hb_000179_190--Hb_000110_350 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_004774_090 Hb_004774_090 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4684 21.4033 25.9818 23.4208 7.41 10.7262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09354 5.51934 11.4726 8.32919 21.7801

CAGE analysis