Hb_088774_010

Information

Type -
Description -
Location Contig88774: 2510-3308
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088774_010 0.0 - - -
2 Hb_001722_020 0.1002841577 - - -
3 Hb_088065_010 0.1574364176 - - hypothetical protein glysoja_007934 [Glycine soja]
4 Hb_015930_010 0.1601500715 - - uncharacterized protein LOC100499930 [Glycine max]
5 Hb_000523_100 0.1630879599 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
6 Hb_071923_010 0.1729444255 - - -
7 Hb_000248_010 0.1748237288 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
8 Hb_000295_090 0.1767418252 - - Clathrin light chain 2 [Glycine soja]
9 Hb_005933_010 0.1841486967 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
10 Hb_124587_010 0.1890450453 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
11 Hb_001235_060 0.195435751 - - -
12 Hb_002960_050 0.1985767838 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
13 Hb_005305_060 0.1988777324 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
14 Hb_144898_010 0.2006160515 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_000270_500 0.204306045 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
16 Hb_005965_010 0.2043443471 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_002249_110 0.2047155981 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
18 Hb_126112_010 0.2054630125 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
19 Hb_103351_010 0.2078822425 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
20 Hb_009486_010 0.2112075421 - - -

Gene co-expression network

sample Hb_088774_010 Hb_088774_010 Hb_001722_020 Hb_001722_020 Hb_088774_010--Hb_001722_020 Hb_088065_010 Hb_088065_010 Hb_088774_010--Hb_088065_010 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_000523_100 Hb_000523_100 Hb_088774_010--Hb_000523_100 Hb_071923_010 Hb_071923_010 Hb_088774_010--Hb_071923_010 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_144898_010 Hb_144898_010 Hb_001722_020--Hb_144898_010 Hb_005305_060 Hb_005305_060 Hb_001722_020--Hb_005305_060 Hb_005965_010 Hb_005965_010 Hb_001722_020--Hb_005965_010 Hb_001722_020--Hb_071923_010 Hb_000295_100 Hb_000295_100 Hb_001722_020--Hb_000295_100 Hb_088065_010--Hb_000523_100 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_088065_010--Hb_000248_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_015930_010--Hb_001722_020 Hb_001846_050 Hb_001846_050 Hb_015930_010--Hb_001846_050 Hb_009486_010 Hb_009486_010 Hb_015930_010--Hb_009486_010 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_000295_090 Hb_000295_090 Hb_000523_100--Hb_000295_090 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_000523_100--Hb_071923_010 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_071923_010--Hb_144898_010 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020 Hb_002960_050 Hb_002960_050 Hb_000248_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_000248_010--Hb_000248_030 Hb_000248_010--Hb_073559_010 Hb_001235_060 Hb_001235_060 Hb_000248_010--Hb_001235_060 Hb_005933_010 Hb_005933_010 Hb_000248_010--Hb_005933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90404 0.171321 0.610804 1.16943 2.43307 17.6986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69467 1.67078 0.462905 0.467031 0.501171

CAGE analysis