Hb_088916_010

Information

Type -
Description -
Location Contig88916: 3-2087
Sequence    

Annotation

kegg
ID pop:POPTR_0015s14080g
description POPTRDRAFT_575727; kinase family protein
nr
ID XP_012090359.1
description PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
swissprot
ID Q9STJ8
description Receptor-like serine/threonine-protein kinase At4g25390 OS=Arabidopsis thaliana GN=At4g25390 PE=2 SV=1
trembl
ID A0A067JEP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26192 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase at4g25390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61548: 179-1547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_088916_010 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
2 Hb_001838_050 0.0935142866 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
3 Hb_008140_060 0.102684136 - - Cytochrome P450, putative [Theobroma cacao]
4 Hb_000740_130 0.1045932441 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
5 Hb_000920_360 0.1076361257 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
6 Hb_001105_200 0.1121634477 - - catalytic, putative [Ricinus communis]
7 Hb_182021_010 0.1125178912 - - sucrose transporter 4 [Hevea brasiliensis]
8 Hb_000852_050 0.1137800464 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
9 Hb_004574_010 0.1146684887 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_019229_020 0.1159064706 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_002150_010 0.118174899 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
12 Hb_012807_140 0.1201408357 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
13 Hb_002391_350 0.1202294192 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
14 Hb_003031_030 0.1230817972 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
15 Hb_000844_100 0.1231513185 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
16 Hb_009642_010 0.1246450568 - - Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_001104_280 0.1262791788 - - PREDICTED: UPF0481 protein At3g47200 [Jatropha curcas]
18 Hb_003399_030 0.1266380249 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
19 Hb_000616_050 0.1266754516 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
20 Hb_002551_090 0.1274770467 - - hypothetical protein JCGZ_17224 [Jatropha curcas]

Gene co-expression network

sample Hb_088916_010 Hb_088916_010 Hb_001838_050 Hb_001838_050 Hb_088916_010--Hb_001838_050 Hb_008140_060 Hb_008140_060 Hb_088916_010--Hb_008140_060 Hb_000740_130 Hb_000740_130 Hb_088916_010--Hb_000740_130 Hb_000920_360 Hb_000920_360 Hb_088916_010--Hb_000920_360 Hb_001105_200 Hb_001105_200 Hb_088916_010--Hb_001105_200 Hb_182021_010 Hb_182021_010 Hb_088916_010--Hb_182021_010 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_003031_030 Hb_003031_030 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_000616_050 Hb_000616_050 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_094637_010 Hb_094637_010 Hb_008140_060--Hb_094637_010 Hb_000934_290 Hb_000934_290 Hb_008140_060--Hb_000934_290 Hb_000844_100 Hb_000844_100 Hb_008140_060--Hb_000844_100 Hb_001158_080 Hb_001158_080 Hb_008140_060--Hb_001158_080 Hb_002551_090 Hb_002551_090 Hb_008140_060--Hb_002551_090 Hb_000740_130--Hb_182021_010 Hb_000740_130--Hb_000844_100 Hb_132515_010 Hb_132515_010 Hb_000740_130--Hb_132515_010 Hb_054865_030 Hb_054865_030 Hb_000740_130--Hb_054865_030 Hb_008692_010 Hb_008692_010 Hb_000740_130--Hb_008692_010 Hb_000286_190 Hb_000286_190 Hb_000920_360--Hb_000286_190 Hb_005797_030 Hb_005797_030 Hb_000920_360--Hb_005797_030 Hb_029508_030 Hb_029508_030 Hb_000920_360--Hb_029508_030 Hb_000608_450 Hb_000608_450 Hb_000920_360--Hb_000608_450 Hb_001864_010 Hb_001864_010 Hb_000920_360--Hb_001864_010 Hb_004712_020 Hb_004712_020 Hb_001105_200--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_001105_200--Hb_012807_140 Hb_009642_010 Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_002122_040 Hb_002122_040 Hb_001105_200--Hb_002122_040 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_182021_010--Hb_000844_100 Hb_009785_010 Hb_009785_010 Hb_182021_010--Hb_009785_010 Hb_182021_010--Hb_002551_090 Hb_012807_060 Hb_012807_060 Hb_182021_010--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153658 15.4612 1.1113 6.82984 0.0538979 0.0414972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0508746 0.128773 32.7292 4.05464

CAGE analysis