Hb_089032_010

Information

Type -
Description -
Location Contig89032: 475-2807
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02190g
description POPTRDRAFT_779089; nodulin family protein
nr
ID XP_012073088.1
description PREDICTED: flotillin-like protein 3 [Jatropha curcas]
swissprot
ID D2XNQ8
description Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1
trembl
ID A0A067KYS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06070 PE=4 SV=1
Gene Ontology
ID GO:0016020
description flotillin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61628: 981-2262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089032_010 0.0 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
2 Hb_001113_030 0.1915674397 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
3 Hb_001936_070 0.1924518111 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Jatropha curcas]
4 Hb_000111_480 0.2001301289 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
5 Hb_000671_170 0.2020089373 - - kinase, putative [Ricinus communis]
6 Hb_011716_050 0.2032109775 - - serine acetyltransferase [Hevea brasiliensis]
7 Hb_006846_020 0.2063620431 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
8 Hb_005288_020 0.2095517889 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
9 Hb_007676_020 0.2138180319 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
10 Hb_124315_030 0.2175625897 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
11 Hb_003120_040 0.2176971661 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
12 Hb_000672_150 0.220599942 - - Patatin T5 precursor, putative [Ricinus communis]
13 Hb_001959_120 0.2260006691 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
14 Hb_000042_250 0.2349041652 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
15 Hb_002686_120 0.2354788609 - - short-chain type dehydrogenase, putative [Ricinus communis]
16 Hb_002766_050 0.2390104649 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
17 Hb_000868_100 0.2397267188 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
18 Hb_101733_040 0.2405186225 - - cytochrome P450 CYP71B63v2 [Populus trichocarpa]
19 Hb_000084_220 0.2424578501 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
20 Hb_000038_040 0.244919612 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_089032_010 Hb_089032_010 Hb_001113_030 Hb_001113_030 Hb_089032_010--Hb_001113_030 Hb_001936_070 Hb_001936_070 Hb_089032_010--Hb_001936_070 Hb_000111_480 Hb_000111_480 Hb_089032_010--Hb_000111_480 Hb_000671_170 Hb_000671_170 Hb_089032_010--Hb_000671_170 Hb_011716_050 Hb_011716_050 Hb_089032_010--Hb_011716_050 Hb_006846_020 Hb_006846_020 Hb_089032_010--Hb_006846_020 Hb_124315_030 Hb_124315_030 Hb_001113_030--Hb_124315_030 Hb_001113_030--Hb_000111_480 Hb_000672_150 Hb_000672_150 Hb_001113_030--Hb_000672_150 Hb_008173_030 Hb_008173_030 Hb_001113_030--Hb_008173_030 Hb_001959_120 Hb_001959_120 Hb_001113_030--Hb_001959_120 Hb_001936_070--Hb_000111_480 Hb_004235_060 Hb_004235_060 Hb_001936_070--Hb_004235_060 Hb_001936_070--Hb_011716_050 Hb_001936_070--Hb_001113_030 Hb_000042_250 Hb_000042_250 Hb_001936_070--Hb_000042_250 Hb_000111_480--Hb_000042_250 Hb_002686_120 Hb_002686_120 Hb_000111_480--Hb_002686_120 Hb_007676_020 Hb_007676_020 Hb_000111_480--Hb_007676_020 Hb_000111_480--Hb_011716_050 Hb_000868_100 Hb_000868_100 Hb_000671_170--Hb_000868_100 Hb_000671_160 Hb_000671_160 Hb_000671_170--Hb_000671_160 Hb_000671_170--Hb_000672_150 Hb_000671_170--Hb_001959_120 Hb_000671_170--Hb_001113_030 Hb_000671_170--Hb_008173_030 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_011716_050--Hb_001959_120 Hb_006846_020--Hb_000038_040 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_006846_020--Hb_007007_080 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0313527 0.734027 0.26028 0.086896 0.0146841 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0357573 0.253164 0.157786 0.483644 0.0585394

CAGE analysis