Hb_089032_020

Information

Type -
Description -
Location Contig89032: 7376-15079
Sequence    

Annotation

kegg
ID rcu:RCOM_0010990
description brca1-associated protein, putative
nr
ID XP_012073089.1
description PREDICTED: BRCA1-associated protein [Jatropha curcas]
swissprot
ID Q7Z569
description BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
trembl
ID A0A067KXL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06071 PE=4 SV=1
Gene Ontology
ID GO:0000151
description brca1-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61629: 7465-15171 , PASA_asmbl_61631: 15849-21710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089032_020 0.0 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
2 Hb_003788_050 0.0970474552 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
3 Hb_002067_040 0.1035588691 - - dihydrodipicolinate reductase, putative [Ricinus communis]
4 Hb_000640_230 0.1045770215 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001518_040 0.1107874226 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
6 Hb_000358_250 0.1129488959 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
7 Hb_001300_070 0.1153130673 - - OTU domain-containing protein 6B, putative [Ricinus communis]
8 Hb_003025_020 0.1174169381 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_005098_010 0.1178230525 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
10 Hb_003097_150 0.1179032163 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
11 Hb_003086_070 0.1179353522 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
12 Hb_003746_040 0.1188844923 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
13 Hb_005618_160 0.1191234251 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
14 Hb_001047_100 0.1195591771 - - 40S ribosomal protein S18, putative [Ricinus communis]
15 Hb_000076_270 0.1207708797 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
16 Hb_003506_080 0.120803339 - - dipeptidyl peptidase IV, putative [Ricinus communis]
17 Hb_004198_010 0.1240365732 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
18 Hb_000526_050 0.1252130586 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
19 Hb_003849_250 0.126284595 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
20 Hb_004044_020 0.1270518576 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_089032_020 Hb_089032_020 Hb_003788_050 Hb_003788_050 Hb_089032_020--Hb_003788_050 Hb_002067_040 Hb_002067_040 Hb_089032_020--Hb_002067_040 Hb_000640_230 Hb_000640_230 Hb_089032_020--Hb_000640_230 Hb_001518_040 Hb_001518_040 Hb_089032_020--Hb_001518_040 Hb_000358_250 Hb_000358_250 Hb_089032_020--Hb_000358_250 Hb_001300_070 Hb_001300_070 Hb_089032_020--Hb_001300_070 Hb_003788_050--Hb_000358_250 Hb_003025_020 Hb_003025_020 Hb_003788_050--Hb_003025_020 Hb_003788_050--Hb_000640_230 Hb_009803_040 Hb_009803_040 Hb_003788_050--Hb_009803_040 Hb_000076_270 Hb_000076_270 Hb_003788_050--Hb_000076_270 Hb_002272_180 Hb_002272_180 Hb_002067_040--Hb_002272_180 Hb_000322_050 Hb_000322_050 Hb_002067_040--Hb_000322_050 Hb_002067_040--Hb_003025_020 Hb_002067_040--Hb_000076_270 Hb_000429_200 Hb_000429_200 Hb_002067_040--Hb_000429_200 Hb_012490_030 Hb_012490_030 Hb_002067_040--Hb_012490_030 Hb_004044_020 Hb_004044_020 Hb_000640_230--Hb_004044_020 Hb_003097_150 Hb_003097_150 Hb_000640_230--Hb_003097_150 Hb_002007_250 Hb_002007_250 Hb_000640_230--Hb_002007_250 Hb_010128_130 Hb_010128_130 Hb_000640_230--Hb_010128_130 Hb_000207_310 Hb_000207_310 Hb_000640_230--Hb_000207_310 Hb_002367_130 Hb_002367_130 Hb_000640_230--Hb_002367_130 Hb_029510_140 Hb_029510_140 Hb_001518_040--Hb_029510_140 Hb_000384_090 Hb_000384_090 Hb_001518_040--Hb_000384_090 Hb_000617_020 Hb_000617_020 Hb_001518_040--Hb_000617_020 Hb_060809_010 Hb_060809_010 Hb_001518_040--Hb_060809_010 Hb_003005_020 Hb_003005_020 Hb_001518_040--Hb_003005_020 Hb_001518_040--Hb_003097_150 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000116_180 Hb_000116_180 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000358_250--Hb_000429_200 Hb_003849_250 Hb_003849_250 Hb_000358_250--Hb_003849_250 Hb_001300_070--Hb_000076_270 Hb_002273_130 Hb_002273_130 Hb_001300_070--Hb_002273_130 Hb_001341_120 Hb_001341_120 Hb_001300_070--Hb_001341_120 Hb_000059_150 Hb_000059_150 Hb_001300_070--Hb_000059_150 Hb_008595_010 Hb_008595_010 Hb_001300_070--Hb_008595_010 Hb_005098_010 Hb_005098_010 Hb_001300_070--Hb_005098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.45186 3.65326 4.02277 6.45932 21.5732 16.5432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49428 13.2557 4.15935 7.01648 5.32111

CAGE analysis