Hb_089032_030

Information

Type -
Description -
Location Contig89032: 17419-21840
Sequence    

Annotation

kegg
ID rcu:RCOM_0011000
description 3-isopropylmalate dehydrogenase, putative (EC:1.1.1.85)
nr
ID XP_012073090.1
description PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID P29102
description 3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1
trembl
ID A0A067KL83
description 3-isopropylmalate dehydrogenase OS=Jatropha curcas GN=JCGZ_06072 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 3-isopropylmalate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61631: 15849-21710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089032_030 0.0 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
2 Hb_010812_120 0.065101559 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
3 Hb_003502_060 0.0664233264 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
4 Hb_003349_090 0.0666622409 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
5 Hb_009615_070 0.0684090562 - - type X protein phosphatase-II [Populus trichocarpa]
6 Hb_010423_030 0.0689128323 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
7 Hb_001545_170 0.0709390737 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
8 Hb_000614_250 0.0714912863 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
9 Hb_004889_010 0.0716838856 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
10 Hb_003697_040 0.0755630646 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
11 Hb_004108_220 0.0760709405 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
12 Hb_000477_060 0.0760857672 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_000003_230 0.0763134783 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_001222_080 0.0770805934 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_000856_010 0.0779324755 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
16 Hb_003994_260 0.0780548217 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
17 Hb_003151_040 0.0792203629 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
18 Hb_001633_210 0.0798007447 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
19 Hb_006615_240 0.0798972034 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
20 Hb_005914_170 0.0809636346 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_089032_030 Hb_089032_030 Hb_010812_120 Hb_010812_120 Hb_089032_030--Hb_010812_120 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_003349_090 Hb_003349_090 Hb_089032_030--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_089032_030--Hb_009615_070 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170 Hb_010812_120--Hb_003349_090 Hb_001633_210 Hb_001633_210 Hb_010812_120--Hb_001633_210 Hb_000250_060 Hb_000250_060 Hb_010812_120--Hb_000250_060 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_000030_030 Hb_000030_030 Hb_003502_060--Hb_000030_030 Hb_008013_050 Hb_008013_050 Hb_003502_060--Hb_008013_050 Hb_002301_150 Hb_002301_150 Hb_003502_060--Hb_002301_150 Hb_003151_040 Hb_003151_040 Hb_003502_060--Hb_003151_040 Hb_015778_010 Hb_015778_010 Hb_003502_060--Hb_015778_010 Hb_004837_160 Hb_004837_160 Hb_003349_090--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_003349_090--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_003349_090--Hb_000373_130 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_001470_030 Hb_001470_030 Hb_010423_030--Hb_001470_030 Hb_001030_020 Hb_001030_020 Hb_010423_030--Hb_001030_020 Hb_001278_100 Hb_001278_100 Hb_010423_030--Hb_001278_100 Hb_001123_060 Hb_001123_060 Hb_010423_030--Hb_001123_060 Hb_012022_040 Hb_012022_040 Hb_010423_030--Hb_012022_040 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_001545_170--Hb_003349_090 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7209 19.842 18.8075 31.6064 11.6173 24.1171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5719 45.0298 33.3163 27.2994 21.0916

CAGE analysis