Hb_089032_040

Information

Type -
Description -
Location Contig89032: 23246-24788
Sequence    

Annotation

kegg
ID tcc:TCM_027343
description Pentatricopeptide repeat (PPR) superfamily protein isoform 2
nr
ID XP_012073091.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
swissprot
ID Q9M8M3
description Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1
trembl
ID A0A067KLK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06073 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61633: 24576-25082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089032_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
2 Hb_000395_190 0.0622186848 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
3 Hb_002217_300 0.0629593144 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
4 Hb_010128_080 0.0657960821 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
5 Hb_000061_460 0.0751476899 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
6 Hb_005731_130 0.0753770243 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
7 Hb_000676_110 0.0776164981 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
8 Hb_001143_160 0.0794718418 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
9 Hb_002942_100 0.0804372185 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
10 Hb_000185_040 0.0808715912 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
11 Hb_008695_180 0.0828646999 - - eukaryotic translation initiation factor [Hevea brasiliensis]
12 Hb_000107_330 0.0833060921 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
13 Hb_002311_040 0.0843064067 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
14 Hb_001617_050 0.084398356 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
15 Hb_000260_270 0.0856881285 - - zinc finger protein, putative [Ricinus communis]
16 Hb_006938_080 0.0859415184 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
17 Hb_001341_170 0.0863939008 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
18 Hb_004607_050 0.0875008617 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_000291_110 0.0875768991 - - eukaryotic translation initiation factor [Hevea brasiliensis]
20 Hb_005065_010 0.0880823465 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]

Gene co-expression network

sample Hb_089032_040 Hb_089032_040 Hb_000395_190 Hb_000395_190 Hb_089032_040--Hb_000395_190 Hb_002217_300 Hb_002217_300 Hb_089032_040--Hb_002217_300 Hb_010128_080 Hb_010128_080 Hb_089032_040--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_089032_040--Hb_000061_460 Hb_005731_130 Hb_005731_130 Hb_089032_040--Hb_005731_130 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_000395_190--Hb_005731_130 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_000898_040 Hb_000898_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_010128_080--Hb_000003_250 Hb_000280_080 Hb_000280_080 Hb_000061_460--Hb_000280_080 Hb_003058_190 Hb_003058_190 Hb_000061_460--Hb_003058_190 Hb_000061_460--Hb_005731_130 Hb_000061_460--Hb_000260_270 Hb_004994_220 Hb_004994_220 Hb_000061_460--Hb_004994_220 Hb_005731_130--Hb_000260_270 Hb_005731_130--Hb_010128_080 Hb_001143_160 Hb_001143_160 Hb_005731_130--Hb_001143_160 Hb_001369_420 Hb_001369_420 Hb_000676_110--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000676_110--Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000676_110--Hb_001252_080 Hb_008695_180 Hb_008695_180 Hb_000676_110--Hb_008695_180 Hb_000676_110--Hb_001143_160 Hb_001493_030 Hb_001493_030 Hb_000676_110--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02076 2.50105 1.07982 2.70005 3.63001 3.58962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56384 3.08294 5.27468 3.00792 1.73713

CAGE analysis