Hb_089140_040

Information

Type -
Description -
Location Contig89140: 34452-39930
Sequence    

Annotation

kegg
ID rcu:RCOM_0711890
description hypothetical protein
nr
ID XP_012077052.1
description PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RRA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61662: 34063-34371 , PASA_asmbl_61663: 34463-39988 , PASA_asmbl_61664: 34385-39018
cDNA
(Sanger)
(ID:Location)		 016_J02.ab1: 34632-36223

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_040 0.0 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
2 Hb_006468_010 0.0833905995 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
3 Hb_012092_050 0.0862895316 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
4 Hb_005489_140 0.0920219416 - - PREDICTED: maspardin [Jatropha curcas]
5 Hb_005215_020 0.0938046015 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
6 Hb_000008_420 0.0942406068 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
7 Hb_015026_130 0.0949922 - - quinone oxidoreductase, putative [Ricinus communis]
8 Hb_000926_260 0.0958606309 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001004_140 0.0960553487 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
10 Hb_001408_110 0.0969909384 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
11 Hb_002915_060 0.0988144887 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
12 Hb_001008_100 0.1004794137 - - JHL25H03.10 [Jatropha curcas]
13 Hb_000856_300 0.1009536825 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
14 Hb_008053_060 0.1023243355 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
15 Hb_006502_030 0.1031787082 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
16 Hb_006006_040 0.1032865214 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
17 Hb_002740_090 0.1033155092 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
18 Hb_001328_080 0.1038854533 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
19 Hb_000088_270 0.104190613 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
20 Hb_000260_660 0.1042191326 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089140_040 Hb_089140_040 Hb_006468_010 Hb_006468_010 Hb_089140_040--Hb_006468_010 Hb_012092_050 Hb_012092_050 Hb_089140_040--Hb_012092_050 Hb_005489_140 Hb_005489_140 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_000008_420 Hb_000008_420 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130 Hb_000890_160 Hb_000890_160 Hb_006468_010--Hb_000890_160 Hb_003636_080 Hb_003636_080 Hb_006468_010--Hb_003636_080 Hb_000297_030 Hb_000297_030 Hb_006468_010--Hb_000297_030 Hb_016461_020 Hb_016461_020 Hb_006468_010--Hb_016461_020 Hb_115137_010 Hb_115137_010 Hb_006468_010--Hb_115137_010 Hb_007257_060 Hb_007257_060 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_001300_280 Hb_001300_280 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_006588_060 Hb_006588_060 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_107298_010 Hb_107298_010 Hb_005489_140--Hb_107298_010 Hb_025336_020 Hb_025336_020 Hb_005489_140--Hb_025336_020 Hb_001019_050 Hb_001019_050 Hb_005489_140--Hb_001019_050 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020 Hb_006006_040 Hb_006006_040 Hb_005215_020--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_005215_020--Hb_000085_450 Hb_000089_180 Hb_000089_180 Hb_005215_020--Hb_000089_180 Hb_007839_020 Hb_007839_020 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_001328_080 Hb_001328_080 Hb_005215_020--Hb_001328_080 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_000008_420--Hb_006588_060 Hb_000008_420--Hb_012092_050 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_015026_130--Hb_000089_180 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8986 4.84099 3.62693 5.24842 1.84018 1.77721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2921 2.36579 0.880579 5.19624 2.33027

CAGE analysis