Hb_089140_060

Information

Type -
Description -
Location Contig89140: 48191-49069
Sequence    

Annotation

kegg
ID tcc:TCM_037529
description hypothetical protein
nr
ID XP_007012640.1
description Uncharacterized protein TCM_037529 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GT23
description Uncharacterized protein OS=Theobroma cacao GN=TCM_037529 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_060 0.0 - - Uncharacterized protein TCM_037529 [Theobroma cacao]
2 Hb_000733_040 0.1779091288 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
3 Hb_001377_050 0.2101773199 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
4 Hb_002929_130 0.2345548409 - - phosphofructokinase [Hevea brasiliensis]
5 Hb_000815_100 0.2546836495 - - -
6 Hb_002035_090 0.2598014454 - - -
7 Hb_040506_010 0.2628253033 - - protein binding protein, putative [Ricinus communis]
8 Hb_012384_050 0.2662193277 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
9 Hb_000836_050 0.271020893 - - -
10 Hb_129067_010 0.2710573932 - - Cytochrome P450 superfamily protein [Theobroma cacao]
11 Hb_100964_010 0.2746984344 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_026206_020 0.276651044 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]
13 Hb_006615_100 0.2794187491 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
14 Hb_000028_630 0.2807735282 - - PIN-like protein, partial [Selaginella apoda]
15 Hb_073212_010 0.2832808456 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
16 Hb_087221_010 0.2847650207 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
17 Hb_032844_020 0.2880278548 - - -
18 Hb_007765_060 0.290722088 - - Proliferating cell nuclear antigen [Theobroma cacao]
19 Hb_105085_010 0.2927876205 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_040779_010 0.2953193655 - - -

Gene co-expression network

sample Hb_089140_060 Hb_089140_060 Hb_000733_040 Hb_000733_040 Hb_089140_060--Hb_000733_040 Hb_001377_050 Hb_001377_050 Hb_089140_060--Hb_001377_050 Hb_002929_130 Hb_002929_130 Hb_089140_060--Hb_002929_130 Hb_000815_100 Hb_000815_100 Hb_089140_060--Hb_000815_100 Hb_002035_090 Hb_002035_090 Hb_089140_060--Hb_002035_090 Hb_040506_010 Hb_040506_010 Hb_089140_060--Hb_040506_010 Hb_129067_010 Hb_129067_010 Hb_000733_040--Hb_129067_010 Hb_088542_010 Hb_088542_010 Hb_000733_040--Hb_088542_010 Hb_073212_010 Hb_073212_010 Hb_000733_040--Hb_073212_010 Hb_000733_040--Hb_040506_010 Hb_001691_050 Hb_001691_050 Hb_000733_040--Hb_001691_050 Hb_002804_050 Hb_002804_050 Hb_001377_050--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_001377_050--Hb_006615_100 Hb_001633_100 Hb_001633_100 Hb_001377_050--Hb_001633_100 Hb_002783_050 Hb_002783_050 Hb_001377_050--Hb_002783_050 Hb_030414_050 Hb_030414_050 Hb_001377_050--Hb_030414_050 Hb_000093_130 Hb_000093_130 Hb_001377_050--Hb_000093_130 Hb_100964_010 Hb_100964_010 Hb_002929_130--Hb_100964_010 Hb_029921_020 Hb_029921_020 Hb_002929_130--Hb_029921_020 Hb_000256_210 Hb_000256_210 Hb_002929_130--Hb_000256_210 Hb_007603_020 Hb_007603_020 Hb_002929_130--Hb_007603_020 Hb_026206_020 Hb_026206_020 Hb_002929_130--Hb_026206_020 Hb_002192_070 Hb_002192_070 Hb_000815_100--Hb_002192_070 Hb_000849_150 Hb_000849_150 Hb_000815_100--Hb_000849_150 Hb_007765_060 Hb_007765_060 Hb_000815_100--Hb_007765_060 Hb_000815_100--Hb_030414_050 Hb_095471_010 Hb_095471_010 Hb_000815_100--Hb_095471_010 Hb_000544_040 Hb_000544_040 Hb_000815_100--Hb_000544_040 Hb_002035_090--Hb_006615_100 Hb_002035_080 Hb_002035_080 Hb_002035_090--Hb_002035_080 Hb_002035_090--Hb_007603_020 Hb_002035_090--Hb_026206_020 Hb_007680_020 Hb_007680_020 Hb_002035_090--Hb_007680_020 Hb_000997_410 Hb_000997_410 Hb_002035_090--Hb_000997_410 Hb_000186_100 Hb_000186_100 Hb_040506_010--Hb_000186_100 Hb_005470_010 Hb_005470_010 Hb_040506_010--Hb_005470_010 Hb_007382_040 Hb_007382_040 Hb_040506_010--Hb_007382_040 Hb_004307_040 Hb_004307_040 Hb_040506_010--Hb_004307_040 Hb_000895_040 Hb_000895_040 Hb_040506_010--Hb_000895_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.319214 0.0869135 0.082653 0 0.0974739 0.143465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0855639 0.0189351 0

CAGE analysis