Hb_089140_100

Information

Type -
Description -
Location Contig89140: 59593-68485
Sequence    

Annotation

kegg
ID pxb:103929725
description uncharacterized LOC103929725
nr
ID XP_012077043.1
description PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61677: 59553-59692 , PASA_asmbl_61678: 59821-60127 , PASA_asmbl_61681: 68410-68599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_100 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
2 Hb_007479_020 0.0785196926 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
3 Hb_003376_130 0.0786803326 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
4 Hb_000134_330 0.0801825213 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
5 Hb_001538_110 0.0823728701 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
6 Hb_001912_010 0.0830499089 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
7 Hb_000025_600 0.0839265012 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
8 Hb_001383_060 0.0845460474 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
9 Hb_002571_020 0.0853592195 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
10 Hb_009851_100 0.0875782881 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
11 Hb_001433_050 0.0888560838 - - 60S ribosomal protein L18, putative [Ricinus communis]
12 Hb_003376_030 0.091346076 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
13 Hb_003927_130 0.0922378071 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
14 Hb_000212_260 0.0924451933 - - acyl-carrier-protein [Triadica sebifera]
15 Hb_000329_330 0.0925204798 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
16 Hb_001248_080 0.0947971312 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
17 Hb_010172_070 0.0948184685 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
18 Hb_008173_090 0.0948750374 - - glutathione peroxidase, putative [Ricinus communis]
19 Hb_148200_010 0.0953687046 - - hypothetical protein 33 [Hevea brasiliensis]
20 Hb_000099_060 0.0968283831 - - hypothetical protein JCGZ_23948 [Jatropha curcas]

Gene co-expression network

sample Hb_089140_100 Hb_089140_100 Hb_007479_020 Hb_007479_020 Hb_089140_100--Hb_007479_020 Hb_003376_130 Hb_003376_130 Hb_089140_100--Hb_003376_130 Hb_000134_330 Hb_000134_330 Hb_089140_100--Hb_000134_330 Hb_001538_110 Hb_001538_110 Hb_089140_100--Hb_001538_110 Hb_001912_010 Hb_001912_010 Hb_089140_100--Hb_001912_010 Hb_000025_600 Hb_000025_600 Hb_089140_100--Hb_000025_600 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_001383_060 Hb_001383_060 Hb_007479_020--Hb_001383_060 Hb_001433_050 Hb_001433_050 Hb_007479_020--Hb_001433_050 Hb_000120_750 Hb_000120_750 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_001268_140 Hb_001268_140 Hb_000134_330--Hb_001268_140 Hb_000134_330--Hb_000025_600 Hb_002296_060 Hb_002296_060 Hb_000134_330--Hb_002296_060 Hb_001300_270 Hb_001300_270 Hb_000134_330--Hb_001300_270 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_000134_330--Hb_008173_090 Hb_002918_200 Hb_002918_200 Hb_001538_110--Hb_002918_200 Hb_000648_060 Hb_000648_060 Hb_001538_110--Hb_000648_060 Hb_002716_070 Hb_002716_070 Hb_001538_110--Hb_002716_070 Hb_004837_140 Hb_004837_140 Hb_001538_110--Hb_004837_140 Hb_000008_250 Hb_000008_250 Hb_001538_110--Hb_000008_250 Hb_001912_010--Hb_000212_260 Hb_001912_010--Hb_007479_020 Hb_010172_070 Hb_010172_070 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_000025_600--Hb_002296_060 Hb_001818_020 Hb_001818_020 Hb_000025_600--Hb_001818_020 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_000025_600--Hb_001300_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.369882 0.14244 0.234992 0.265614 0.589323 0.434177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03706 1.39468 0.790959 0.282935 0.0944805

CAGE analysis