Hb_089305_010

Information

Type -
Description -
Location Contig89305: 15314-16564
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10310g
description POPTRDRAFT_557402; U-box domain-containing family protein
nr
ID XP_012078957.1
description PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
swissprot
ID Q9FXA4
description U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1
trembl
ID A0A067KJ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14786 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 041_G21.ab1: 16553-16739

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089305_010 0.0 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
2 Hb_000120_090 0.095938011 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
3 Hb_001621_050 0.1055976343 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
4 Hb_000567_330 0.1088926482 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
5 Hb_010812_060 0.1102315108 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
6 Hb_000110_260 0.110965745 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
7 Hb_021409_110 0.1143383544 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_005725_280 0.118227839 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
9 Hb_001102_200 0.1256274056 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
10 Hb_004899_110 0.1277279014 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
11 Hb_007130_020 0.1282704873 - - -
12 Hb_007224_010 0.1319448866 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
13 Hb_002609_290 0.1355229248 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
14 Hb_001627_010 0.1401439138 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_000181_330 0.1418820325 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
16 Hb_002014_050 0.1434181182 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
17 Hb_002311_280 0.1455053167 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_001357_060 0.1458474799 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
19 Hb_073171_050 0.146437971 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
20 Hb_000336_180 0.1478841497 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089305_010 Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_000110_260 Hb_000110_260 Hb_089305_010--Hb_000110_260 Hb_021409_110 Hb_021409_110 Hb_089305_010--Hb_021409_110 Hb_000120_090--Hb_000110_260 Hb_000120_090--Hb_001621_050 Hb_001102_200 Hb_001102_200 Hb_000120_090--Hb_001102_200 Hb_000272_030 Hb_000272_030 Hb_000120_090--Hb_000272_030 Hb_001213_030 Hb_001213_030 Hb_000120_090--Hb_001213_030 Hb_001621_050--Hb_021409_110 Hb_005725_280 Hb_005725_280 Hb_001621_050--Hb_005725_280 Hb_000077_160 Hb_000077_160 Hb_001621_050--Hb_000077_160 Hb_001621_050--Hb_001102_200 Hb_007130_020 Hb_007130_020 Hb_000567_330--Hb_007130_020 Hb_033006_020 Hb_033006_020 Hb_000567_330--Hb_033006_020 Hb_004899_110 Hb_004899_110 Hb_000567_330--Hb_004899_110 Hb_000836_090 Hb_000836_090 Hb_000567_330--Hb_000836_090 Hb_000567_330--Hb_010812_060 Hb_001366_390 Hb_001366_390 Hb_010812_060--Hb_001366_390 Hb_000071_090 Hb_000071_090 Hb_010812_060--Hb_000071_090 Hb_002609_290 Hb_002609_290 Hb_010812_060--Hb_002609_290 Hb_010812_060--Hb_007130_020 Hb_001254_020 Hb_001254_020 Hb_010812_060--Hb_001254_020 Hb_000110_260--Hb_001102_200 Hb_000110_260--Hb_021409_110 Hb_005408_080 Hb_005408_080 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_001863_340 Hb_001863_340 Hb_021409_110--Hb_001863_340 Hb_021409_110--Hb_005725_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64123 39.5747 49.3762 37.383 0.486417 0.63351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16579 2.49034 1.81164 4.887 29.0405

CAGE analysis