Hb_089341_010

Information

Type -
Description -
Location Contig89341: 61-849
Sequence    

Annotation

kegg
ID tcc:TCM_018339
description hypothetical protein
nr
ID XP_007032431.1
description Uncharacterized protein TCM_018339 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EG48
description Uncharacterized protein OS=Theobroma cacao GN=TCM_018339 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089341_010 0.0 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
2 Hb_002426_010 0.1847206151 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_002003_110 0.223065503 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
4 Hb_004483_020 0.2239362236 - - -
5 Hb_001303_070 0.2651489929 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
6 Hb_137515_010 0.2762256774 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
7 Hb_061365_010 0.2775467132 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_000510_220 0.2776244924 - - -
9 Hb_009189_060 0.2856789441 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
10 Hb_005203_050 0.2919240318 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_009922_010 0.2993856398 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
12 Hb_000032_530 0.3022733337 - - -
13 Hb_053643_010 0.3036029027 - - Zinc finger protein GIS2 [Medicago truncatula]
14 Hb_006634_010 0.3087682848 - - -
15 Hb_005214_020 0.3108649138 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
16 Hb_093432_020 0.3114939537 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
17 Hb_010447_020 0.3171096283 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
18 Hb_033926_010 0.321003228 - - -
19 Hb_002194_070 0.3216541149 - - -
20 Hb_002928_070 0.3243470571 - - -

Gene co-expression network

sample Hb_089341_010 Hb_089341_010 Hb_002426_010 Hb_002426_010 Hb_089341_010--Hb_002426_010 Hb_002003_110 Hb_002003_110 Hb_089341_010--Hb_002003_110 Hb_004483_020 Hb_004483_020 Hb_089341_010--Hb_004483_020 Hb_001303_070 Hb_001303_070 Hb_089341_010--Hb_001303_070 Hb_137515_010 Hb_137515_010 Hb_089341_010--Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_089341_010--Hb_061365_010 Hb_000510_220 Hb_000510_220 Hb_002426_010--Hb_000510_220 Hb_002426_010--Hb_004483_020 Hb_009189_060 Hb_009189_060 Hb_002426_010--Hb_009189_060 Hb_001031_060 Hb_001031_060 Hb_002426_010--Hb_001031_060 Hb_006634_010 Hb_006634_010 Hb_002426_010--Hb_006634_010 Hb_027337_070 Hb_027337_070 Hb_002003_110--Hb_027337_070 Hb_000407_060 Hb_000407_060 Hb_002003_110--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_002003_110--Hb_004361_030 Hb_172632_020 Hb_172632_020 Hb_002003_110--Hb_172632_020 Hb_005269_030 Hb_005269_030 Hb_002003_110--Hb_005269_030 Hb_004483_020--Hb_000510_220 Hb_004108_010 Hb_004108_010 Hb_004483_020--Hb_004108_010 Hb_093432_020 Hb_093432_020 Hb_004483_020--Hb_093432_020 Hb_002374_330 Hb_002374_330 Hb_004483_020--Hb_002374_330 Hb_078901_020 Hb_078901_020 Hb_001303_070--Hb_078901_020 Hb_184746_010 Hb_184746_010 Hb_001303_070--Hb_184746_010 Hb_001303_070--Hb_002426_010 Hb_000318_240 Hb_000318_240 Hb_001303_070--Hb_000318_240 Hb_001303_070--Hb_002003_110 Hb_137515_010--Hb_061365_010 Hb_053643_010 Hb_053643_010 Hb_137515_010--Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_137515_010--Hb_009922_010 Hb_137515_010--Hb_093432_020 Hb_005203_050 Hb_005203_050 Hb_137515_010--Hb_005203_050 Hb_002928_070 Hb_002928_070 Hb_137515_010--Hb_002928_070 Hb_061365_010--Hb_053643_010 Hb_061365_010--Hb_009922_010 Hb_061365_010--Hb_093432_020 Hb_061365_010--Hb_002928_070 Hb_061365_010--Hb_005203_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0603471 0.022499 0 0.0280151 0.0728693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis