Hb_089610_010

Information

Type -
Description -
Location Contig89610: 13-1554
Sequence    

Annotation

kegg
ID sly:104649178
description uncharacterized LOC104649178
nr
ID XP_012466484.1
description PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q7XYF1
description Protease (Fragment) OS=Gossypium hirsutum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089610_010 0.0 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
2 Hb_002595_020 0.0599493274 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
3 Hb_031862_280 0.0744036871 - - hypothetical protein VITISV_012289 [Vitis vinifera]
4 Hb_004908_010 0.1413424376 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
5 Hb_170935_010 0.1521840469 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
6 Hb_017987_010 0.2116490167 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
7 Hb_011316_130 0.2197000013 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000375_040 0.2218190653 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
9 Hb_008953_010 0.2265111825 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
10 Hb_037960_010 0.229762966 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001410_100 0.2355592631 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
12 Hb_000608_070 0.240604948 - - -
13 Hb_043903_010 0.2417675529 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
14 Hb_010253_010 0.2605827822 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
15 Hb_081224_010 0.2806522561 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
16 Hb_000008_130 0.2823055829 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
17 Hb_000013_040 0.2823055829 - - -
18 Hb_000013_070 0.2823055829 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000014_180 0.2823055829 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
20 Hb_000021_080 0.2823055829 - - -

Gene co-expression network

sample Hb_089610_010 Hb_089610_010 Hb_002595_020 Hb_002595_020 Hb_089610_010--Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_089610_010--Hb_031862_280 Hb_004908_010 Hb_004908_010 Hb_089610_010--Hb_004908_010 Hb_170935_010 Hb_170935_010 Hb_089610_010--Hb_170935_010 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_002595_020--Hb_031862_280 Hb_002595_020--Hb_004908_010 Hb_002595_020--Hb_170935_010 Hb_000608_070 Hb_000608_070 Hb_002595_020--Hb_000608_070 Hb_001410_100 Hb_001410_100 Hb_002595_020--Hb_001410_100 Hb_031862_280--Hb_004908_010 Hb_031862_280--Hb_170935_010 Hb_031862_280--Hb_000608_070 Hb_004246_010 Hb_004246_010 Hb_031862_280--Hb_004246_010 Hb_004908_010--Hb_170935_010 Hb_004908_010--Hb_000608_070 Hb_004908_010--Hb_004246_010 Hb_170935_010--Hb_000608_070 Hb_170935_010--Hb_004246_010 Hb_000684_060 Hb_000684_060 Hb_017987_010--Hb_000684_060 Hb_010253_010 Hb_010253_010 Hb_017987_010--Hb_010253_010 Hb_007926_020 Hb_007926_020 Hb_017987_010--Hb_007926_020 Hb_148986_010 Hb_148986_010 Hb_017987_010--Hb_148986_010 Hb_008953_010 Hb_008953_010 Hb_017987_010--Hb_008953_010 Hb_003857_010 Hb_003857_010 Hb_017987_010--Hb_003857_010 Hb_000264_270 Hb_000264_270 Hb_011316_130--Hb_000264_270 Hb_000466_150 Hb_000466_150 Hb_011316_130--Hb_000466_150 Hb_011316_130--Hb_017987_010 Hb_011316_130--Hb_008953_010 Hb_000375_040 Hb_000375_040 Hb_011316_130--Hb_000375_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0152151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0858526 0

CAGE analysis