Hb_089736_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig89736: 9493-10674
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28850g
description POPTRDRAFT_829714; CONSTANS-like family protein
nr
ID XP_011003377.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
swissprot
ID Q8RWD0
description Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2
trembl
ID B9GH63
description CONSTANS-like family protein OS=Populus trichocarpa GN=POPTR_0001s28850g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61785: 9473-10837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089736_010 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
2 Hb_054615_010 0.0475581528 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
3 Hb_088118_010 0.0552098488 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_001123_340 0.080180099 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
5 Hb_074240_030 0.0905805732 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
6 Hb_001926_010 0.0928043642 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
7 Hb_003387_010 0.0948403728 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
8 Hb_031862_190 0.0964436281 - - -
9 Hb_004003_020 0.1016103092 - - unnamed protein product [Coffea canephora]
10 Hb_002918_170 0.1017174943 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
11 Hb_005365_040 0.103091026 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
12 Hb_001369_590 0.1032278249 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
13 Hb_001921_040 0.1038469903 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
14 Hb_015299_040 0.1045378382 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
15 Hb_000152_650 0.1051884512 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_003077_010 0.1055153372 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002121_030 0.1055647581 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
18 Hb_000187_100 0.106770698 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_000436_110 0.1089188696 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
20 Hb_000431_080 0.1092917695 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]

Gene co-expression network

sample Hb_089736_010 Hb_089736_010 Hb_054615_010 Hb_054615_010 Hb_089736_010--Hb_054615_010 Hb_088118_010 Hb_088118_010 Hb_089736_010--Hb_088118_010 Hb_001123_340 Hb_001123_340 Hb_089736_010--Hb_001123_340 Hb_074240_030 Hb_074240_030 Hb_089736_010--Hb_074240_030 Hb_001926_010 Hb_001926_010 Hb_089736_010--Hb_001926_010 Hb_003387_010 Hb_003387_010 Hb_089736_010--Hb_003387_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_054615_010--Hb_074240_030 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_054615_010--Hb_002121_030 Hb_000816_080 Hb_000816_080 Hb_088118_010--Hb_000816_080 Hb_088118_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_088118_010--Hb_001921_040 Hb_004007_080 Hb_004007_080 Hb_088118_010--Hb_004007_080 Hb_001218_060 Hb_001218_060 Hb_001123_340--Hb_001218_060 Hb_000282_010 Hb_000282_010 Hb_001123_340--Hb_000282_010 Hb_001123_340--Hb_001926_010 Hb_000187_100 Hb_000187_100 Hb_001123_340--Hb_000187_100 Hb_000264_160 Hb_000264_160 Hb_001123_340--Hb_000264_160 Hb_000010_320 Hb_000010_320 Hb_074240_030--Hb_000010_320 Hb_001856_190 Hb_001856_190 Hb_074240_030--Hb_001856_190 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_001926_010--Hb_001921_040 Hb_001926_010--Hb_000282_010 Hb_002235_260 Hb_002235_260 Hb_001926_010--Hb_002235_260 Hb_019762_030 Hb_019762_030 Hb_001926_010--Hb_019762_030 Hb_004117_060 Hb_004117_060 Hb_001926_010--Hb_004117_060 Hb_002918_170 Hb_002918_170 Hb_003387_010--Hb_002918_170 Hb_002710_040 Hb_002710_040 Hb_003387_010--Hb_002710_040 Hb_001958_030 Hb_001958_030 Hb_003387_010--Hb_001958_030 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.319887 12.3631 1.83519 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.19217 2.25257

CAGE analysis