Hb_089889_010

Information

Type -
Description -
Location Contig89889: 2218-5387
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01110g
description POPTRDRAFT_558319; zinc finger family protein
nr
ID XP_012064689.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067LH90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05432 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61806: 2155-5399 , PASA_asmbl_61807: 2227-3194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089889_010 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
2 Hb_003399_100 0.1531070077 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
3 Hb_002045_190 0.1897101921 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
4 Hb_001975_130 0.1918626614 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]
5 Hb_005375_050 0.1935548099 - - inorganic pyrophosphatase, putative [Ricinus communis]
6 Hb_001890_020 0.2007015009 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
7 Hb_030627_070 0.2080018353 - - histone H4 [Zea mays]
8 Hb_003938_170 0.2112831774 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
9 Hb_005725_150 0.2117392853 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
10 Hb_011512_160 0.2138303069 - - conserved hypothetical protein [Ricinus communis]
11 Hb_168440_010 0.2168157184 - - PREDICTED: peroxidase 9 [Jatropha curcas]
12 Hb_004116_100 0.217407332 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
13 Hb_033594_040 0.2183196434 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
14 Hb_118282_010 0.2266831333 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
15 Hb_029510_130 0.2271289653 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
16 Hb_006275_060 0.2297984505 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
17 Hb_006445_020 0.2383768357 - - hypothetical protein L484_026741 [Morus notabilis]
18 Hb_000431_150 0.2394788194 - - ribosomal protein L27, putative [Ricinus communis]
19 Hb_002078_120 0.2434778995 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
20 Hb_021576_080 0.2435879534 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]

Gene co-expression network

sample Hb_089889_010 Hb_089889_010 Hb_003399_100 Hb_003399_100 Hb_089889_010--Hb_003399_100 Hb_002045_190 Hb_002045_190 Hb_089889_010--Hb_002045_190 Hb_001975_130 Hb_001975_130 Hb_089889_010--Hb_001975_130 Hb_005375_050 Hb_005375_050 Hb_089889_010--Hb_005375_050 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_030627_070 Hb_030627_070 Hb_089889_010--Hb_030627_070 Hb_003399_100--Hb_002045_190 Hb_003399_100--Hb_030627_070 Hb_006275_060 Hb_006275_060 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_002045_190--Hb_006275_060 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_001975_130--Hb_033594_040 Hb_001975_130--Hb_002045_190 Hb_001975_130--Hb_089140_090 Hb_106552_070 Hb_106552_070 Hb_001975_130--Hb_106552_070 Hb_001975_130--Hb_003399_100 Hb_005375_050--Hb_003399_100 Hb_118282_010 Hb_118282_010 Hb_005375_050--Hb_118282_010 Hb_005375_050--Hb_002045_190 Hb_014720_010 Hb_014720_010 Hb_005375_050--Hb_014720_010 Hb_005375_050--Hb_004116_120 Hb_001890_020--Hb_005725_150 Hb_010180_030 Hb_010180_030 Hb_001890_020--Hb_010180_030 Hb_029510_130 Hb_029510_130 Hb_001890_020--Hb_029510_130 Hb_003784_040 Hb_003784_040 Hb_001890_020--Hb_003784_040 Hb_005504_040 Hb_005504_040 Hb_001890_020--Hb_005504_040 Hb_001478_020 Hb_001478_020 Hb_001890_020--Hb_001478_020 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.837915 0.719585 18.5446 2.24295 0.215643 0.696383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92576 3.78702 4.77175 0.884279 1.97346

CAGE analysis