Hb_089995_010

Information

Type -
Description -
Location Contig89995: 1517-3635
Sequence    

Annotation

kegg
ID egr:104443770
description phosphatidylinositol glycan anchor biosynthesis class U protein-like
nr
ID XP_010055599.1
description PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059C143
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00536 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61814: 1565-2991 , PASA_asmbl_61815: 1786-2756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089995_010 0.0 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
2 Hb_005391_040 0.07438097 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
3 Hb_005245_080 0.0836322887 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
4 Hb_006907_130 0.0871120814 - - unnamed protein product [Coffea canephora]
5 Hb_172426_040 0.0873024787 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
6 Hb_003918_010 0.0876630689 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
7 Hb_000015_040 0.0889506228 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
8 Hb_003050_220 0.089504701 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
9 Hb_004734_040 0.0905492512 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
10 Hb_001545_080 0.0920133178 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
11 Hb_150651_040 0.0927190192 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_008013_050 0.0928757641 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
13 Hb_000958_110 0.0933502822 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
14 Hb_006059_050 0.0943826973 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_000053_020 0.0950320502 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_029584_050 0.0959960961 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
17 Hb_001983_020 0.0962728946 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_001653_020 0.0969499572 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
19 Hb_001006_190 0.0981217688 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
20 Hb_010098_050 0.0998169736 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]

Gene co-expression network

sample Hb_089995_010 Hb_089995_010 Hb_005391_040 Hb_005391_040 Hb_089995_010--Hb_005391_040 Hb_005245_080 Hb_005245_080 Hb_089995_010--Hb_005245_080 Hb_006907_130 Hb_006907_130 Hb_089995_010--Hb_006907_130 Hb_172426_040 Hb_172426_040 Hb_089995_010--Hb_172426_040 Hb_003918_010 Hb_003918_010 Hb_089995_010--Hb_003918_010 Hb_000015_040 Hb_000015_040 Hb_089995_010--Hb_000015_040 Hb_150651_040 Hb_150651_040 Hb_005391_040--Hb_150651_040 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_005391_040--Hb_000465_390 Hb_005245_080--Hb_150651_040 Hb_005245_080--Hb_005391_040 Hb_008013_050 Hb_008013_050 Hb_005245_080--Hb_008013_050 Hb_000030_290 Hb_000030_290 Hb_005245_080--Hb_000030_290 Hb_004724_270 Hb_004724_270 Hb_005245_080--Hb_004724_270 Hb_015934_070 Hb_015934_070 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_172426_040--Hb_003918_010 Hb_003787_010 Hb_003787_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190 Hb_000221_160 Hb_000221_160 Hb_003918_010--Hb_000221_160 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.27925 4.25745 6.40779 7.04298 5.60583 7.31711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0344 11.3425 8.16014 9.17086 6.4794

CAGE analysis