Hb_090051_030

Information

Type -
Description -
Location Contig90051: 56009-61621
Sequence    

Annotation

kegg
ID pop:POPTR_0016s01150g
description hypothetical protein
nr
ID XP_012074030.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID A0A067KN54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09513 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61949: 55986-60762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090051_030 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
2 Hb_082821_010 0.0504884812 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
3 Hb_001633_130 0.0547420339 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
4 Hb_000146_050 0.0643143031 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
5 Hb_005023_010 0.0716706271 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
6 Hb_033642_030 0.0788707122 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
7 Hb_006455_120 0.0805759288 - - n6-DNA-methyltransferase, putative [Ricinus communis]
8 Hb_005291_050 0.0816968751 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
9 Hb_007904_200 0.0823206274 - - protein binding protein, putative [Ricinus communis]
10 Hb_017700_010 0.0830977976 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
11 Hb_001018_130 0.08404706 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
12 Hb_000213_010 0.0852186186 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
13 Hb_000060_090 0.0859851607 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
14 Hb_003994_280 0.0867515879 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
15 Hb_005144_160 0.0870264037 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
16 Hb_058999_030 0.0894742087 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
17 Hb_000010_330 0.0895881333 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
18 Hb_032050_040 0.0896544181 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
19 Hb_054865_150 0.0910247839 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
20 Hb_000029_300 0.092055508 - - hypothetical protein JCGZ_10048 [Jatropha curcas]

Gene co-expression network

sample Hb_090051_030 Hb_090051_030 Hb_082821_010 Hb_082821_010 Hb_090051_030--Hb_082821_010 Hb_001633_130 Hb_001633_130 Hb_090051_030--Hb_001633_130 Hb_000146_050 Hb_000146_050 Hb_090051_030--Hb_000146_050 Hb_005023_010 Hb_005023_010 Hb_090051_030--Hb_005023_010 Hb_033642_030 Hb_033642_030 Hb_090051_030--Hb_033642_030 Hb_006455_120 Hb_006455_120 Hb_090051_030--Hb_006455_120 Hb_082821_010--Hb_001633_130 Hb_082821_010--Hb_006455_120 Hb_007904_200 Hb_007904_200 Hb_082821_010--Hb_007904_200 Hb_002863_050 Hb_002863_050 Hb_082821_010--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_082821_010--Hb_002235_250 Hb_001633_130--Hb_000146_050 Hb_001633_130--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_001633_130--Hb_001159_130 Hb_003177_030 Hb_003177_030 Hb_001633_130--Hb_003177_030 Hb_012322_020 Hb_012322_020 Hb_000146_050--Hb_012322_020 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_001018_130 Hb_001018_130 Hb_005023_010--Hb_001018_130 Hb_000300_630 Hb_000300_630 Hb_005023_010--Hb_000300_630 Hb_001018_110 Hb_001018_110 Hb_005023_010--Hb_001018_110 Hb_005023_010--Hb_001633_130 Hb_005023_010--Hb_000146_050 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5133 7.71598 9.63307 18.3465 15.4887 16.772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42458 10.8914 14.3703 7.05444 10.5207

CAGE analysis