Hb_090158_010

Information

Type -
Description -
Location Contig90158: 4834-5190
Sequence    

Annotation

kegg
ID rcu:RCOM_1968400
description hypothetical protein
nr
ID XP_002538845.1
description hypothetical protein RCOM_1968400 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TKS6
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_1968400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090158_010 0.0 - - hypothetical protein RCOM_1968400 [Ricinus communis]
2 Hb_075764_010 0.1269806385 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
3 Hb_099878_050 0.1336419271 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
4 Hb_085972_010 0.1370081935 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
5 Hb_088163_010 0.1399176827 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
6 Hb_146675_010 0.1447256591 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
7 Hb_129672_010 0.1472850536 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
8 Hb_005686_120 0.1516840791 - - -
9 Hb_002477_050 0.1592776002 - - unnamed protein product [Coffea canephora]
10 Hb_000676_080 0.1592941573 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
11 Hb_038237_010 0.1600967559 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_009270_030 0.1602648926 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
13 Hb_005170_010 0.1609990653 - - -
14 Hb_000029_090 0.1631082877 - - Nicalin precursor, putative [Ricinus communis]
15 Hb_004709_020 0.163586467 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
16 Hb_000603_070 0.1635944897 - - -
17 Hb_000215_310 0.1642563466 - - -
18 Hb_001747_030 0.1653321893 - - hypothetical protein F383_08210 [Gossypium arboreum]
19 Hb_001829_040 0.1656242256 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_002490_010 0.1658931964 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]

Gene co-expression network

sample Hb_090158_010 Hb_090158_010 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_099878_050 Hb_099878_050 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_129672_010 Hb_129672_010 Hb_090158_010--Hb_129672_010 Hb_075764_010--Hb_088163_010 Hb_000230_180 Hb_000230_180 Hb_075764_010--Hb_000230_180 Hb_075764_010--Hb_099878_050 Hb_002611_020 Hb_002611_020 Hb_075764_010--Hb_002611_020 Hb_165402_010 Hb_165402_010 Hb_075764_010--Hb_165402_010 Hb_002122_010 Hb_002122_010 Hb_075764_010--Hb_002122_010 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_006643_020 Hb_006643_020 Hb_085972_010--Hb_006643_020 Hb_001911_040 Hb_001911_040 Hb_085972_010--Hb_001911_040 Hb_001829_040 Hb_001829_040 Hb_085972_010--Hb_001829_040 Hb_000022_050 Hb_000022_050 Hb_085972_010--Hb_000022_050 Hb_001396_110 Hb_001396_110 Hb_085972_010--Hb_001396_110 Hb_005686_120 Hb_005686_120 Hb_085972_010--Hb_005686_120 Hb_001767_130 Hb_001767_130 Hb_088163_010--Hb_001767_130 Hb_088163_010--Hb_000230_180 Hb_088163_010--Hb_099878_050 Hb_088163_010--Hb_165402_010 Hb_146675_010--Hb_099878_050 Hb_002192_090 Hb_002192_090 Hb_146675_010--Hb_002192_090 Hb_146675_010--Hb_133724_010 Hb_000317_140 Hb_000317_140 Hb_146675_010--Hb_000317_140 Hb_002388_010 Hb_002388_010 Hb_146675_010--Hb_002388_010 Hb_001250_060 Hb_001250_060 Hb_129672_010--Hb_001250_060 Hb_000676_080 Hb_000676_080 Hb_129672_010--Hb_000676_080 Hb_000635_070 Hb_000635_070 Hb_129672_010--Hb_000635_070 Hb_009270_030 Hb_009270_030 Hb_129672_010--Hb_009270_030 Hb_082006_010 Hb_082006_010 Hb_129672_010--Hb_082006_010 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5035 3.05438 5.03124 15.251 3.70451 10.4634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.76351 5.11967 1.51473 7.28846 1.65756

CAGE analysis