Hb_090511_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig90511: 1705-2518
Sequence    

Annotation

kegg
ID rcu:RCOM_0899510
description DNA binding protein, putative
nr
ID XP_002517624.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9XI33
description Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1
trembl
ID B9RV55
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0899510 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor win1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62026: 1409-2524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090511_010 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_012675_030 0.0003071314 - - hypothetical protein POPTR_0013s04780g [Populus trichocarpa]
3 Hb_130862_010 0.0022509403 - - purine permease, putative [Ricinus communis]
4 Hb_000769_040 0.0050929623 - - hypothetical protein VITISV_028082 [Vitis vinifera]
5 Hb_022862_010 0.0088865218 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
6 Hb_000193_040 0.0109214234 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
7 Hb_105767_030 0.0115100821 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007975_070 0.0129142523 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
9 Hb_154114_040 0.013495659 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
10 Hb_000173_040 0.0142023232 - - putative xylanase inhibitor, partial [Triticum aestivum]
11 Hb_000417_240 0.0178590959 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
12 Hb_003995_040 0.0179991958 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
13 Hb_000173_070 0.0186795319 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
14 Hb_000307_080 0.0196711204 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011179_010 0.0202314227 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
16 Hb_000280_070 0.0216324244 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
17 Hb_000784_050 0.0221569531 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
18 Hb_030385_030 0.0236526545 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
19 Hb_002151_140 0.0238868626 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
20 Hb_000691_060 0.0292633614 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]

Gene co-expression network

sample Hb_090511_010 Hb_090511_010 Hb_012675_030 Hb_012675_030 Hb_090511_010--Hb_012675_030 Hb_130862_010 Hb_130862_010 Hb_090511_010--Hb_130862_010 Hb_000769_040 Hb_000769_040 Hb_090511_010--Hb_000769_040 Hb_022862_010 Hb_022862_010 Hb_090511_010--Hb_022862_010 Hb_000193_040 Hb_000193_040 Hb_090511_010--Hb_000193_040 Hb_105767_030 Hb_105767_030 Hb_090511_010--Hb_105767_030 Hb_012675_030--Hb_130862_010 Hb_012675_030--Hb_000769_040 Hb_012675_030--Hb_022862_010 Hb_012675_030--Hb_000193_040 Hb_012675_030--Hb_105767_030 Hb_130862_010--Hb_000769_040 Hb_130862_010--Hb_105767_030 Hb_007975_070 Hb_007975_070 Hb_130862_010--Hb_007975_070 Hb_130862_010--Hb_022862_010 Hb_000769_040--Hb_022862_010 Hb_000769_040--Hb_000193_040 Hb_154114_040 Hb_154114_040 Hb_000769_040--Hb_154114_040 Hb_022862_010--Hb_000193_040 Hb_022862_010--Hb_154114_040 Hb_000173_040 Hb_000173_040 Hb_022862_010--Hb_000173_040 Hb_000193_040--Hb_154114_040 Hb_000193_040--Hb_000173_040 Hb_011179_010 Hb_011179_010 Hb_000193_040--Hb_011179_010 Hb_105767_030--Hb_007975_070 Hb_000417_240 Hb_000417_240 Hb_105767_030--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_105767_030--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_105767_030--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_105767_030--Hb_000307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.6534 2.85809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis