Hb_090521_010

Information

Type -
Description -
Location Contig90521: 615-1306
Sequence    

Annotation

kegg
ID rcu:RCOM_0683200
description Major allergen Pru ar, putative
nr
ID XP_002516994.1
description Major allergen Pru ar, putative [Ricinus communis]
swissprot
ID O50001
description Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1
trembl
ID B9RTC5
description Major allergen Pru ar, putative OS=Ricinus communis GN=RCOM_0683200 PE=3 SV=1
Gene Ontology
ID GO:0006952
description pathogenesis-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62027: 419-1280
cDNA
(Sanger)
(ID:Location)		 053_F05.ab1: 514-1280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090521_010 0.0 - - Major allergen Pru ar, putative [Ricinus communis]
2 Hb_036116_010 0.0017107891 - - JHL22C18.10 [Jatropha curcas]
3 Hb_000471_130 0.0024784984 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002217_010 0.0033727907 - - Peroxiredoxin, putative [Ricinus communis]
5 Hb_002157_110 0.0070770361 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
6 Hb_001002_010 0.0082948583 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006663_120 0.0094991208 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000679_180 0.0097962606 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_004899_240 0.0101467537 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007227_020 0.0102154553 - - -
11 Hb_005333_090 0.013441788 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_003038_020 0.0142000468 - - unnamed protein product [Coffea canephora]
13 Hb_003687_060 0.0149263575 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005356_020 0.0186332251 - - glutaredoxin, grx, putative [Ricinus communis]
15 Hb_001552_010 0.0193622884 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002007_030 0.0211854192 - - conserved hypothetical protein [Ricinus communis]
17 Hb_102179_020 0.022596836 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
18 Hb_010128_140 0.0228321912 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
19 Hb_000397_180 0.0239460956 - - -
20 Hb_003849_210 0.0253763171 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]

Gene co-expression network

sample Hb_090521_010 Hb_090521_010 Hb_036116_010 Hb_036116_010 Hb_090521_010--Hb_036116_010 Hb_000471_130 Hb_000471_130 Hb_090521_010--Hb_000471_130 Hb_002217_010 Hb_002217_010 Hb_090521_010--Hb_002217_010 Hb_002157_110 Hb_002157_110 Hb_090521_010--Hb_002157_110 Hb_001002_010 Hb_001002_010 Hb_090521_010--Hb_001002_010 Hb_006663_120 Hb_006663_120 Hb_090521_010--Hb_006663_120 Hb_036116_010--Hb_000471_130 Hb_036116_010--Hb_002217_010 Hb_036116_010--Hb_002157_110 Hb_004899_240 Hb_004899_240 Hb_036116_010--Hb_004899_240 Hb_036116_010--Hb_001002_010 Hb_000471_130--Hb_002217_010 Hb_000471_130--Hb_001002_010 Hb_000471_130--Hb_006663_120 Hb_000679_180 Hb_000679_180 Hb_000471_130--Hb_000679_180 Hb_002217_010--Hb_001002_010 Hb_002217_010--Hb_006663_120 Hb_002217_010--Hb_000679_180 Hb_002157_110--Hb_004899_240 Hb_005333_090 Hb_005333_090 Hb_002157_110--Hb_005333_090 Hb_003038_020 Hb_003038_020 Hb_002157_110--Hb_003038_020 Hb_003687_060 Hb_003687_060 Hb_002157_110--Hb_003687_060 Hb_001002_010--Hb_006663_120 Hb_001002_010--Hb_000679_180 Hb_007227_020 Hb_007227_020 Hb_001002_010--Hb_007227_020 Hb_006663_120--Hb_000679_180 Hb_006663_120--Hb_007227_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.31893 34.2198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis