Hb_090530_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig90530: 764-4507
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090530_010 0.0 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_008092_080 0.1257506346 - - elongation factor ts, putative [Ricinus communis]
3 Hb_002740_190 0.1297321757 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
4 Hb_024714_080 0.1417419129 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
5 Hb_028707_110 0.1450857877 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
6 Hb_008123_010 0.1473023527 - - -
7 Hb_003077_130 0.1497100223 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
8 Hb_005523_010 0.1512429189 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
9 Hb_000069_490 0.1519348731 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000599_230 0.1522780621 - - -
11 Hb_010757_030 0.1537376958 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002276_070 0.1580405841 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
13 Hb_011616_020 0.161764282 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
14 Hb_003878_080 0.1629946498 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
15 Hb_001437_120 0.16628097 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
16 Hb_002681_080 0.1690496141 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
17 Hb_010984_010 0.1699942847 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002495_060 0.1735333718 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000529_140 0.1746136775 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004785_070 0.1777999925 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_090530_010 Hb_090530_010 Hb_008092_080 Hb_008092_080 Hb_090530_010--Hb_008092_080 Hb_002740_190 Hb_002740_190 Hb_090530_010--Hb_002740_190 Hb_024714_080 Hb_024714_080 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_008123_010 Hb_008123_010 Hb_090530_010--Hb_008123_010 Hb_003077_130 Hb_003077_130 Hb_090530_010--Hb_003077_130 Hb_008092_080--Hb_024714_080 Hb_008092_080--Hb_003077_130 Hb_002681_080 Hb_002681_080 Hb_008092_080--Hb_002681_080 Hb_000069_490 Hb_000069_490 Hb_008092_080--Hb_000069_490 Hb_003427_080 Hb_003427_080 Hb_008092_080--Hb_003427_080 Hb_000803_240 Hb_000803_240 Hb_002740_190--Hb_000803_240 Hb_010984_010 Hb_010984_010 Hb_002740_190--Hb_010984_010 Hb_016760_010 Hb_016760_010 Hb_002740_190--Hb_016760_010 Hb_001723_030 Hb_001723_030 Hb_002740_190--Hb_001723_030 Hb_002740_190--Hb_000069_490 Hb_002740_190--Hb_028707_110 Hb_024714_080--Hb_003077_130 Hb_024714_080--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_024714_080--Hb_028707_110 Hb_000997_140 Hb_000997_140 Hb_024714_080--Hb_000997_140 Hb_001437_120 Hb_001437_120 Hb_028707_110--Hb_001437_120 Hb_028707_110--Hb_000997_140 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_028707_110--Hb_003077_130 Hb_003929_220 Hb_003929_220 Hb_028707_110--Hb_003929_220 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_031658_040 Hb_031658_040 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060 Hb_003077_130--Hb_000069_490 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_010757_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.79996 1.04424 2.2931 1.44652 2.04618 2.96802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.578931 0.195228 1.05108 2.98816 12.1985

CAGE analysis