Hb_090804_010

Information

Type -
Description -
Location Contig90804: 28-746
Sequence    

Annotation

kegg
ID rcu:RCOM_1178050
description ATP-dependent RNA helicase, putative
nr
ID XP_002523081.1
description ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID O22243
description Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2
trembl
ID B9SAR2
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1178050 PE=4 SV=1
Gene Ontology
ID GO:0009507
description atp-dependent rna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090804_010 0.0 - - ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_004204_020 0.0699382682 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
3 Hb_009627_010 0.0750673071 - - Protein dom-3, putative [Ricinus communis]
4 Hb_011318_010 0.0814581366 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
5 Hb_003362_040 0.082600399 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
6 Hb_002805_070 0.0829767815 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
7 Hb_000206_250 0.0847164156 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
8 Hb_000005_380 0.0868112176 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_000032_100 0.0873241512 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
10 Hb_033834_060 0.0898496463 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
11 Hb_019654_190 0.0907584744 - - protein kinase, putative [Ricinus communis]
12 Hb_007407_040 0.0911489513 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_003052_150 0.0927476023 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
14 Hb_000160_040 0.0930770372 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
15 Hb_000179_020 0.0937269971 - - amidase, putative [Ricinus communis]
16 Hb_000244_250 0.0940508437 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
17 Hb_005679_050 0.0944775458 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000048_140 0.0949813949 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
19 Hb_002131_020 0.0951401421 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
20 Hb_000046_440 0.0970745224 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_090804_010 Hb_090804_010 Hb_004204_020 Hb_004204_020 Hb_090804_010--Hb_004204_020 Hb_009627_010 Hb_009627_010 Hb_090804_010--Hb_009627_010 Hb_011318_010 Hb_011318_010 Hb_090804_010--Hb_011318_010 Hb_003362_040 Hb_003362_040 Hb_090804_010--Hb_003362_040 Hb_002805_070 Hb_002805_070 Hb_090804_010--Hb_002805_070 Hb_000206_250 Hb_000206_250 Hb_090804_010--Hb_000206_250 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_000184_130 Hb_000184_130 Hb_004204_020--Hb_000184_130 Hb_004204_020--Hb_003362_040 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_004452_100 Hb_004452_100 Hb_011318_010--Hb_004452_100 Hb_000005_380 Hb_000005_380 Hb_011318_010--Hb_000005_380 Hb_002798_040 Hb_002798_040 Hb_011318_010--Hb_002798_040 Hb_000244_250 Hb_000244_250 Hb_011318_010--Hb_000244_250 Hb_002054_040 Hb_002054_040 Hb_011318_010--Hb_002054_040 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_039253_010 Hb_039253_010 Hb_002805_070--Hb_039253_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_001102_150 Hb_001102_150 Hb_002805_070--Hb_001102_150 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_002805_070--Hb_033834_060 Hb_000123_210 Hb_000123_210 Hb_000206_250--Hb_000123_210 Hb_007101_170 Hb_007101_170 Hb_000206_250--Hb_007101_170 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_001143_160 Hb_001143_160 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.532 12.3839 9.29585 10.5889 29.3977 42.7443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6348 10.9947 29.8929 26.8917 12.6502

CAGE analysis