Hb_090889_010

Information

Type -
Description -
Location Contig90889: 2-2172
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023531mg
description hypothetical protein
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090889_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_003062_020 0.0965744765 - - Polyprotein, putative [Solanum demissum]
3 Hb_012807_070 0.1252794248 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
4 Hb_089568_010 0.133004721 - - ferric reductase oxidase [Manihot esculenta]
5 Hb_006356_010 0.1371336849 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_000039_190 0.1440030097 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_001587_050 0.1514504797 - - -
8 Hb_017098_020 0.159346238 - - Zinc finger protein GIS2 [Medicago truncatula]
9 Hb_001040_090 0.16196443 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
10 Hb_009780_010 0.1623504903 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011038_020 0.1789732277 - - conserved hypothetical protein [Ricinus communis]
12 Hb_100332_020 0.1960187608 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
13 Hb_004374_100 0.2005128725 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
14 Hb_071130_020 0.204561112 - - -
15 Hb_000987_160 0.2047770146 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_000049_170 0.2057393494 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171168_010 0.207042821 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_000042_310 0.2090427432 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
19 Hb_000028_270 0.2120034143 - - -
20 Hb_145331_010 0.2152605063 transcription factor TF Family: NAC hypothetical protein POPTR_0016s07690g [Populus trichocarpa]

Gene co-expression network

sample Hb_090889_010 Hb_090889_010 Hb_003062_020 Hb_003062_020 Hb_090889_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_090889_010--Hb_012807_070 Hb_089568_010 Hb_089568_010 Hb_090889_010--Hb_089568_010 Hb_006356_010 Hb_006356_010 Hb_090889_010--Hb_006356_010 Hb_000039_190 Hb_000039_190 Hb_090889_010--Hb_000039_190 Hb_001587_050 Hb_001587_050 Hb_090889_010--Hb_001587_050 Hb_017098_020 Hb_017098_020 Hb_003062_020--Hb_017098_020 Hb_003062_020--Hb_012807_070 Hb_009780_010 Hb_009780_010 Hb_003062_020--Hb_009780_010 Hb_011038_020 Hb_011038_020 Hb_003062_020--Hb_011038_020 Hb_003062_020--Hb_000039_190 Hb_012807_070--Hb_017098_020 Hb_012807_070--Hb_009780_010 Hb_130579_050 Hb_130579_050 Hb_012807_070--Hb_130579_050 Hb_004880_120 Hb_004880_120 Hb_012807_070--Hb_004880_120 Hb_089568_010--Hb_001587_050 Hb_089568_010--Hb_006356_010 Hb_003302_010 Hb_003302_010 Hb_089568_010--Hb_003302_010 Hb_080033_020 Hb_080033_020 Hb_089568_010--Hb_080033_020 Hb_144045_010 Hb_144045_010 Hb_089568_010--Hb_144045_010 Hb_006356_010--Hb_001587_050 Hb_000987_160 Hb_000987_160 Hb_006356_010--Hb_000987_160 Hb_000042_310 Hb_000042_310 Hb_006356_010--Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_006356_010--Hb_004374_100 Hb_001040_090 Hb_001040_090 Hb_000039_190--Hb_001040_090 Hb_094439_010 Hb_094439_010 Hb_000039_190--Hb_094439_010 Hb_003050_010 Hb_003050_010 Hb_000039_190--Hb_003050_010 Hb_000039_190--Hb_000987_160 Hb_001587_050--Hb_144045_010 Hb_001587_050--Hb_080033_020 Hb_001587_050--Hb_000042_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0205818 0.0230943 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00738259 0.0391552

CAGE analysis