Hb_091368_010

Information

Type -
Description -
Location Contig91368: 89-722
Sequence    

Annotation

kegg
ID rcu:RCOM_0905790
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002518538.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID B9RXR9
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0905790 PE=3 SV=1
Gene Ontology
ID GO:0016706
description gibberellin 2-beta-dioxygenase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62175: 249-410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091368_010 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_001544_010 0.0081592339 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001232_030 0.0105503658 - - hypothetical protein POPTR_0001s18270g [Populus trichocarpa]
4 Hb_000166_010 0.0130886366 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_082864_010 0.0133414089 - - JHL25H03.10 [Jatropha curcas]
6 Hb_015852_010 0.0226852018 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
7 Hb_042666_010 0.0252233791 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_004153_040 0.0261357346 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000940_090 0.0331266982 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
10 Hb_000156_020 0.0349756382 - - PREDICTED: la-related protein 6A [Jatropha curcas]
11 Hb_003176_030 0.0349756382 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
12 Hb_001587_130 0.0360432138 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_017279_020 0.0361256535 - - protein MOTHER of FT and TF 1 [Jatropha curcas]
14 Hb_000319_100 0.0363772026 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
15 Hb_000283_170 0.0447604907 - - ATP binding protein, putative [Ricinus communis]
16 Hb_008021_020 0.0450739579 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
17 Hb_007289_010 0.0452260288 - - cytochrome P450, putative [Ricinus communis]
18 Hb_034661_050 0.0489092406 - - PREDICTED: zinc finger MYM-type protein 1-like, partial [Malus domestica]
19 Hb_000856_220 0.0525216929 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
20 Hb_002793_010 0.0529413004 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_091368_010 Hb_091368_010 Hb_001544_010 Hb_001544_010 Hb_091368_010--Hb_001544_010 Hb_001232_030 Hb_001232_030 Hb_091368_010--Hb_001232_030 Hb_000166_010 Hb_000166_010 Hb_091368_010--Hb_000166_010 Hb_082864_010 Hb_082864_010 Hb_091368_010--Hb_082864_010 Hb_015852_010 Hb_015852_010 Hb_091368_010--Hb_015852_010 Hb_042666_010 Hb_042666_010 Hb_091368_010--Hb_042666_010 Hb_001544_010--Hb_000166_010 Hb_001544_010--Hb_082864_010 Hb_001544_010--Hb_042666_010 Hb_001544_010--Hb_001232_030 Hb_000940_090 Hb_000940_090 Hb_001544_010--Hb_000940_090 Hb_001232_030--Hb_015852_010 Hb_004153_040 Hb_004153_040 Hb_001232_030--Hb_004153_040 Hb_001232_030--Hb_000166_010 Hb_001232_030--Hb_082864_010 Hb_000166_010--Hb_082864_010 Hb_000166_010--Hb_042666_010 Hb_000166_010--Hb_000940_090 Hb_000156_020 Hb_000156_020 Hb_000166_010--Hb_000156_020 Hb_082864_010--Hb_042666_010 Hb_082864_010--Hb_000940_090 Hb_082864_010--Hb_000156_020 Hb_015852_010--Hb_004153_040 Hb_017279_020 Hb_017279_020 Hb_015852_010--Hb_017279_020 Hb_034661_050 Hb_034661_050 Hb_015852_010--Hb_034661_050 Hb_015852_010--Hb_001544_010 Hb_042666_010--Hb_000940_090 Hb_042666_010--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_042666_010--Hb_003176_030 Hb_001587_130 Hb_001587_130 Hb_042666_010--Hb_001587_130 Hb_000319_100 Hb_000319_100 Hb_042666_010--Hb_000319_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0515982 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0374657 0

CAGE analysis