Hb_091433_020

Information

Type -
Description -
Location Contig91433: 14923-27870
Sequence    

Annotation

kegg
ID rcu:RCOM_1152060
description ribosomal RNA methyltransferase, putative
nr
ID XP_002531352.1
description ribosomal RNA methyltransferase, putative [Ricinus communis]
swissprot
ID P38238
description tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM7 PE=1 SV=1
trembl
ID B9SZD3
description Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Ricinus communis GN=RCOM_1152060 PE=3 SV=1
Gene Ontology
ID GO:0008168
description trna (cytidine guanosine -2 -o)-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62200: 16800-27838 , PASA_asmbl_62201: 14950-18492
cDNA
(Sanger)
(ID:Location)		 016_N16.ab1: 14950-18492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091433_020 0.0 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
2 Hb_000417_360 0.0614735174 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
3 Hb_033642_080 0.0689243383 - - V-type proton ATPase subunit E [Hevea brasiliensis]
4 Hb_004767_080 0.0732612963 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
5 Hb_000731_190 0.0740806852 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
6 Hb_000496_120 0.0746061216 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
7 Hb_011671_100 0.0775716829 - - 60S ribosomal protein L15 [Populus trichocarpa]
8 Hb_007441_040 0.0796668846 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
9 Hb_006478_150 0.0811231387 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
10 Hb_000571_020 0.0815592341 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
11 Hb_009182_010 0.0818196545 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
12 Hb_000735_090 0.0818991774 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
13 Hb_180074_010 0.0819803705 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
14 Hb_011671_440 0.0839852556 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
15 Hb_004543_040 0.08410898 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000261_140 0.0843186394 - - -
17 Hb_001863_430 0.0847031936 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_006478_160 0.0854704218 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
19 Hb_000525_020 0.0858783549 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_153544_010 0.0859735664 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]

Gene co-expression network

sample Hb_091433_020 Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_033642_080--Hb_000496_120 Hb_033642_080--Hb_000417_360 Hb_006478_150 Hb_006478_150 Hb_033642_080--Hb_006478_150 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010 Hb_005305_150 Hb_005305_150 Hb_004767_080--Hb_005305_150 Hb_018124_010 Hb_018124_010 Hb_004767_080--Hb_018124_010 Hb_004767_080--Hb_011671_100 Hb_004767_080--Hb_000417_360 Hb_002056_050 Hb_002056_050 Hb_004767_080--Hb_002056_050 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000215_060 Hb_000215_060 Hb_000496_120--Hb_000215_060 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_000496_120--Hb_005305_150 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_003787_010 Hb_003787_010 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_011671_100--Hb_000417_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.61102 3.31688 5.13073 5.86725 2.84784 4.85234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48121 17.1739 7.60983 6.88294 2.76847

CAGE analysis