Hb_091433_040

Information

Type -
Description -
Location Contig91433: 28671-29060
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12020g
description POPTRDRAFT_576937; hypothetical protein
nr
ID XP_012087900.1
description PREDICTED: josephin-like protein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IG63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12020g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62202: 28404-29117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091433_040 0.0 - - PREDICTED: josephin-like protein [Jatropha curcas]
2 Hb_005914_070 0.1024427214 - - conserved hypothetical protein [Ricinus communis]
3 Hb_113906_010 0.1367314053 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
4 Hb_000227_200 0.157225753 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
5 Hb_000450_020 0.1602757576 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000111_010 0.1619545445 - - DNA-directed RNA polymerase, putative [Ricinus communis]
7 Hb_000784_040 0.163232007 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
8 Hb_012053_040 0.1719337302 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
9 Hb_012586_020 0.1943118127 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_003052_040 0.1963423275 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001258_140 0.1990644335 - - -
12 Hb_000193_240 0.1992609375 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
13 Hb_000788_080 0.2020233046 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_003095_070 0.2027738769 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
15 Hb_000809_030 0.2043316474 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
16 Hb_000103_110 0.2080667602 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
17 Hb_004942_020 0.2080877216 - - Potassium transporter, putative [Ricinus communis]
18 Hb_001587_210 0.2122561439 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_003786_090 0.2148296867 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
20 Hb_000392_330 0.2176161911 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_091433_040 Hb_091433_040 Hb_005914_070 Hb_005914_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_005914_070--Hb_000227_200 Hb_005914_070--Hb_113906_010 Hb_005914_070--Hb_000111_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_004942_020 Hb_004942_020 Hb_113906_010--Hb_004942_020 Hb_012586_020 Hb_012586_020 Hb_113906_010--Hb_012586_020 Hb_012053_040 Hb_012053_040 Hb_113906_010--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_113906_010--Hb_003095_070 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_001348_230 Hb_001348_230 Hb_000450_020--Hb_001348_230 Hb_001143_070 Hb_001143_070 Hb_000450_020--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_000450_020--Hb_000103_030 Hb_000450_020--Hb_012053_040 Hb_027346_020 Hb_027346_020 Hb_000450_020--Hb_027346_020 Hb_000788_080 Hb_000788_080 Hb_000111_010--Hb_000788_080 Hb_000111_010--Hb_012053_040 Hb_000103_110 Hb_000103_110 Hb_000111_010--Hb_000103_110 Hb_000363_150 Hb_000363_150 Hb_000111_010--Hb_000363_150 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_000784_040--Hb_042223_010 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.388 0.34368 0.717099 1.15379 5.10564 8.71771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2109 129.23 167.838 8.99338 0

CAGE analysis