Hb_091537_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig91537: 4141-6309
Sequence    

Annotation

kegg
ID rcu:RCOM_0674920
description NAC domain-containing protein, putative
nr
ID XP_002521498.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9MA17
description Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1
trembl
ID B9S679
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0674920 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein sombrero-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091537_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_001102_310 0.0564158355 - - Protein AFR, putative [Ricinus communis]
3 Hb_029508_020 0.0906166908 - - -
4 Hb_000541_030 0.1057043416 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000347_210 0.1444479091 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
6 Hb_119808_020 0.152393087 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
7 Hb_003540_180 0.1562003319 - - -
8 Hb_002367_030 0.1846397098 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
9 Hb_016734_050 0.1914421038 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_001153_070 0.1949752422 - - -
11 Hb_012799_080 0.2002720904 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
12 Hb_001628_040 0.2077045864 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
13 Hb_001514_260 0.22434239 - - -
14 Hb_001097_080 0.225885498 transcription factor TF Family: MYB-related triptychon and cpc, putative [Ricinus communis]
15 Hb_013654_030 0.227746032 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
16 Hb_001541_220 0.2286153806 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
17 Hb_017400_010 0.2334175483 - - unnamed protein product [Vitis vinifera]
18 Hb_033153_080 0.236460764 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
19 Hb_001247_050 0.236965223 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
20 Hb_000896_070 0.2378680428 - - ammonium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_091537_010 Hb_091537_010 Hb_001102_310 Hb_001102_310 Hb_091537_010--Hb_001102_310 Hb_029508_020 Hb_029508_020 Hb_091537_010--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_091537_010--Hb_000541_030 Hb_000347_210 Hb_000347_210 Hb_091537_010--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_091537_010--Hb_119808_020 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_002367_030 Hb_002367_030 Hb_001102_310--Hb_002367_030 Hb_001102_310--Hb_003540_180 Hb_001102_310--Hb_029508_020 Hb_001102_310--Hb_000541_030 Hb_017400_010 Hb_017400_010 Hb_001102_310--Hb_017400_010 Hb_029508_020--Hb_000541_030 Hb_029508_020--Hb_000347_210 Hb_029508_020--Hb_119808_020 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_012799_080 Hb_012799_080 Hb_000347_210--Hb_012799_080 Hb_000896_070 Hb_000896_070 Hb_000347_210--Hb_000896_070 Hb_000347_210--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_003540_180--Hb_002367_030 Hb_003540_180--Hb_017400_010 Hb_033153_080 Hb_033153_080 Hb_003540_180--Hb_033153_080 Hb_001628_040 Hb_001628_040 Hb_003540_180--Hb_001628_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0171049 0.298503 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0411365 0 0 0

CAGE analysis