Hb_091761_010

Information

Type -
Description -
Location Contig91761: 1065-1837
Sequence    

Annotation

kegg
ID rcu:RCOM_0037350
description Rhomboid protein, putative
nr
ID XP_002531598.1
description Rhomboid protein, putative [Ricinus communis]
swissprot
ID Q8LB17
description Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2
trembl
ID B9T029
description Rhomboid protein, putative OS=Ricinus communis GN=RCOM_0037350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091761_010 0.0 - - Rhomboid protein, putative [Ricinus communis]
2 Hb_005843_160 0.1577695503 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
3 Hb_001367_010 0.1675423263 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_000091_060 0.1809735497 - - PREDICTED: galactose oxidase [Jatropha curcas]
5 Hb_008511_060 0.1942990819 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
6 Hb_002570_010 0.2029577291 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
7 Hb_000979_010 0.2041012643 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
8 Hb_004657_090 0.2134271538 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
9 Hb_000258_290 0.2142569551 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
10 Hb_002475_120 0.2146649643 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
11 Hb_133230_010 0.2154875927 - - hypothetical protein L484_001846 [Morus notabilis]
12 Hb_054436_010 0.2160888586 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
13 Hb_000579_060 0.2182415038 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
14 Hb_006831_070 0.2184711975 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
15 Hb_003449_060 0.2196804925 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
16 Hb_004374_130 0.2264621908 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
17 Hb_000853_260 0.2280766189 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
18 Hb_006816_330 0.2303198639 - - exonuclease, putative [Ricinus communis]
19 Hb_005618_060 0.2340568972 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
20 Hb_002217_380 0.235680391 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]

Gene co-expression network

sample Hb_091761_010 Hb_091761_010 Hb_005843_160 Hb_005843_160 Hb_091761_010--Hb_005843_160 Hb_001367_010 Hb_001367_010 Hb_091761_010--Hb_001367_010 Hb_000091_060 Hb_000091_060 Hb_091761_010--Hb_000091_060 Hb_008511_060 Hb_008511_060 Hb_091761_010--Hb_008511_060 Hb_002570_010 Hb_002570_010 Hb_091761_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_091761_010--Hb_000979_010 Hb_005843_160--Hb_000091_060 Hb_006831_070 Hb_006831_070 Hb_005843_160--Hb_006831_070 Hb_005843_160--Hb_008511_060 Hb_074197_020 Hb_074197_020 Hb_005843_160--Hb_074197_020 Hb_000258_290 Hb_000258_290 Hb_005843_160--Hb_000258_290 Hb_001367_010--Hb_002570_010 Hb_001367_010--Hb_000979_010 Hb_000200_070 Hb_000200_070 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_009485_020 Hb_009485_020 Hb_000091_060--Hb_009485_020 Hb_000091_060--Hb_074197_020 Hb_000091_060--Hb_000258_290 Hb_002498_050 Hb_002498_050 Hb_000091_060--Hb_002498_050 Hb_029866_100 Hb_029866_100 Hb_000091_060--Hb_029866_100 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_002570_010--Hb_000979_010 Hb_005618_060 Hb_005618_060 Hb_002570_010--Hb_005618_060 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_000979_010--Hb_005618_060 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.32512 1.79126 8.27308 11.1874 9.02007 6.99607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.21771 1.74725 1.9986

CAGE analysis