Hb_092000_010

Information

Type -
Description -
Location Contig92000: 349-1539
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03590g
description POPTRDRAFT_825819; kelch repeat-containing F-box family protein
nr
ID XP_002324389.2
description kelch repeat-containing F-box family protein [Populus trichocarpa]
swissprot
ID Q8LAW2
description F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2
trembl
ID B9ILF7
description Kelch repeat-containing F-box family protein OS=Populus trichocarpa GN=POPTR_0018s03590g PE=4 SV=2
Gene Ontology
ID GO:0009744
description f-box protein afr-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62448: 83-1864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092000_010 0.0 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
2 Hb_000017_230 0.0618712359 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
3 Hb_002045_250 0.0757753698 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
4 Hb_001935_160 0.0767396639 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
5 Hb_001085_290 0.0785428149 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
6 Hb_000088_050 0.0810133394 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
7 Hb_085742_010 0.0812733915 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
8 Hb_001552_030 0.0817269841 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_010315_020 0.0848537292 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
10 Hb_000046_600 0.0855756453 - - PREDICTED: cullin-1-like [Jatropha curcas]
11 Hb_002874_090 0.0867378333 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
12 Hb_001584_350 0.0900862301 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
13 Hb_000977_300 0.092454096 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
14 Hb_000529_060 0.0929775256 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
15 Hb_001723_140 0.0931443466 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
16 Hb_002784_030 0.0935591626 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
17 Hb_121089_030 0.0939188018 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_004204_130 0.0945636806 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
19 Hb_007253_020 0.0955228092 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
20 Hb_000066_150 0.0956016939 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]

Gene co-expression network

sample Hb_092000_010 Hb_092000_010 Hb_000017_230 Hb_000017_230 Hb_092000_010--Hb_000017_230 Hb_002045_250 Hb_002045_250 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_001085_290 Hb_001085_290 Hb_092000_010--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_092000_010--Hb_000088_050 Hb_085742_010 Hb_085742_010 Hb_092000_010--Hb_085742_010 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_001552_030 Hb_001552_030 Hb_000017_230--Hb_001552_030 Hb_000017_230--Hb_001085_290 Hb_000017_230--Hb_000088_050 Hb_002092_070 Hb_002092_070 Hb_002045_250--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_009252_050 Hb_009252_050 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_000529_060 Hb_000529_060 Hb_002045_250--Hb_000529_060 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_001085_290--Hb_000088_050 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_001085_290--Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050 Hb_000739_180 Hb_000739_180 Hb_085742_010--Hb_000739_180 Hb_085742_010--Hb_000879_040 Hb_085742_010--Hb_000017_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4079 17.9219 17.5664 18.1605 7.1514 14.9975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.5266 3.96087 7.18578 14.8111 14.7887

CAGE analysis