Hb_092272_010

Information

Type -
Description -
Location Contig92272: 1112-1647
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092272_010 0.0 - - -
2 Hb_001712_010 0.0653927694 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
3 Hb_118934_010 0.0735554659 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
4 Hb_001401_110 0.0822545662 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
5 Hb_001579_160 0.0927327436 - - PREDICTED: kininogen-1-like [Jatropha curcas]
6 Hb_025557_090 0.093941355 - - hypothetical protein glysoja_034865 [Glycine soja]
7 Hb_000521_060 0.0941708743 - - PREDICTED: protein YLS3-like [Jatropha curcas]
8 Hb_187906_010 0.096463225 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
9 Hb_001722_110 0.0973300079 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
10 Hb_004158_040 0.1013047794 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
11 Hb_009158_010 0.102712525 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
12 Hb_112950_010 0.1034026279 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
13 Hb_006573_120 0.1034158271 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
14 Hb_180088_010 0.1036443966 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001500_020 0.1038359314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004807_070 0.1054862291 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
17 Hb_000087_160 0.1059119976 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_009421_060 0.1063942184 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
19 Hb_003598_050 0.1094848285 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
20 Hb_000438_180 0.1107766865 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_092272_010 Hb_092272_010 Hb_001712_010 Hb_001712_010 Hb_092272_010--Hb_001712_010 Hb_118934_010 Hb_118934_010 Hb_092272_010--Hb_118934_010 Hb_001401_110 Hb_001401_110 Hb_092272_010--Hb_001401_110 Hb_001579_160 Hb_001579_160 Hb_092272_010--Hb_001579_160 Hb_025557_090 Hb_025557_090 Hb_092272_010--Hb_025557_090 Hb_000521_060 Hb_000521_060 Hb_092272_010--Hb_000521_060 Hb_000628_070 Hb_000628_070 Hb_001712_010--Hb_000628_070 Hb_001343_060 Hb_001343_060 Hb_001712_010--Hb_001343_060 Hb_001141_430 Hb_001141_430 Hb_001712_010--Hb_001141_430 Hb_011344_110 Hb_011344_110 Hb_001712_010--Hb_011344_110 Hb_004757_010 Hb_004757_010 Hb_001712_010--Hb_004757_010 Hb_118934_010--Hb_000521_060 Hb_009158_010 Hb_009158_010 Hb_118934_010--Hb_009158_010 Hb_006573_120 Hb_006573_120 Hb_118934_010--Hb_006573_120 Hb_118934_010--Hb_001712_010 Hb_000497_030 Hb_000497_030 Hb_118934_010--Hb_000497_030 Hb_000438_180 Hb_000438_180 Hb_001401_110--Hb_000438_180 Hb_004807_070 Hb_004807_070 Hb_001401_110--Hb_004807_070 Hb_187906_010 Hb_187906_010 Hb_001401_110--Hb_187906_010 Hb_001269_430 Hb_001269_430 Hb_001401_110--Hb_001269_430 Hb_001401_110--Hb_001712_010 Hb_009421_060 Hb_009421_060 Hb_001579_160--Hb_009421_060 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001541_170 Hb_001541_170 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_180088_010 Hb_180088_010 Hb_001579_160--Hb_180088_010 Hb_025557_090--Hb_009158_010 Hb_116349_080 Hb_116349_080 Hb_025557_090--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_025557_090--Hb_000155_030 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_000230_220 Hb_000230_220 Hb_025557_090--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_025557_090--Hb_000964_120 Hb_006816_060 Hb_006816_060 Hb_000521_060--Hb_006816_060 Hb_000521_060--Hb_001712_010 Hb_000521_060--Hb_022250_140 Hb_001433_230 Hb_001433_230 Hb_000521_060--Hb_001433_230 Hb_003598_050 Hb_003598_050 Hb_000521_060--Hb_003598_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.599589 0.515487 6.97608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.00962

CAGE analysis