Hb_092337_010

Information

Type -
Description -
Location Contig92337: 3938-6342
Sequence    

Annotation

kegg
ID tcc:TCM_041889
description Actin depolymerizing factor 4
nr
ID XP_010260094.1
description PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
swissprot
ID Q9FVI1
description Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1
trembl
ID A0A061GW84
description Actin depolymerizing factor 4 OS=Theobroma cacao GN=TCM_041889 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62574: 3770-6345
cDNA
(Sanger)
(ID:Location)		 003_F18.ab1: 3770-5999 , 012_C17.ab1: 3838-5929 , 041_L19.ab1: 3838-6040

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092337_010 0.0 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
2 Hb_004738_100 0.0551691311 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
3 Hb_000692_220 0.0758650227 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
4 Hb_001936_010 0.0762800183 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
5 Hb_003108_020 0.0771368218 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
6 Hb_004705_100 0.0784903628 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
7 Hb_000125_100 0.0787870882 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
8 Hb_155159_020 0.0788397355 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
9 Hb_001159_130 0.0801069028 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
10 Hb_002375_070 0.0805225425 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000035_320 0.0813981966 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
12 Hb_000477_060 0.0816218003 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_000479_190 0.0825308934 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000749_220 0.0833377762 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
15 Hb_003671_020 0.0839151532 - - calcineurin B, putative [Ricinus communis]
16 Hb_000125_080 0.0839860473 transcription factor TF Family: mTERF -
17 Hb_002182_080 0.0845115356 - - 3-5 exonuclease, putative [Ricinus communis]
18 Hb_003502_090 0.0848453493 - - ATP synthase subunit d, putative [Ricinus communis]
19 Hb_001205_150 0.0849565706 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
20 Hb_003177_030 0.0849925329 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]

Gene co-expression network

sample Hb_092337_010 Hb_092337_010 Hb_004738_100 Hb_004738_100 Hb_092337_010--Hb_004738_100 Hb_000692_220 Hb_000692_220 Hb_092337_010--Hb_000692_220 Hb_001936_010 Hb_001936_010 Hb_092337_010--Hb_001936_010 Hb_003108_020 Hb_003108_020 Hb_092337_010--Hb_003108_020 Hb_004705_100 Hb_004705_100 Hb_092337_010--Hb_004705_100 Hb_000125_100 Hb_000125_100 Hb_092337_010--Hb_000125_100 Hb_007416_320 Hb_007416_320 Hb_004738_100--Hb_007416_320 Hb_155159_020 Hb_155159_020 Hb_004738_100--Hb_155159_020 Hb_003092_040 Hb_003092_040 Hb_004738_100--Hb_003092_040 Hb_002631_060 Hb_002631_060 Hb_004738_100--Hb_002631_060 Hb_002105_040 Hb_002105_040 Hb_004738_100--Hb_002105_040 Hb_001205_150 Hb_001205_150 Hb_000692_220--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_000692_220--Hb_000479_190 Hb_010174_020 Hb_010174_020 Hb_000692_220--Hb_010174_020 Hb_002375_070 Hb_002375_070 Hb_000692_220--Hb_002375_070 Hb_003125_010 Hb_003125_010 Hb_000692_220--Hb_003125_010 Hb_001159_130 Hb_001159_130 Hb_001936_010--Hb_001159_130 Hb_094836_010 Hb_094836_010 Hb_001936_010--Hb_094836_010 Hb_000116_270 Hb_000116_270 Hb_001936_010--Hb_000116_270 Hb_001799_210 Hb_001799_210 Hb_001936_010--Hb_001799_210 Hb_002620_020 Hb_002620_020 Hb_001936_010--Hb_002620_020 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_005686_060 Hb_005686_060 Hb_004705_100--Hb_005686_060 Hb_010172_080 Hb_010172_080 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_004705_100--Hb_000692_220 Hb_009773_020 Hb_009773_020 Hb_004705_100--Hb_009773_020 Hb_003671_020 Hb_003671_020 Hb_000125_100--Hb_003671_020 Hb_003414_050 Hb_003414_050 Hb_000125_100--Hb_003414_050 Hb_000125_100--Hb_001205_150 Hb_009615_070 Hb_009615_070 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.701 98.6032 73.1258 215.367 117.606 193.095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
176.518 218.81 251.105 115.27 73.992

CAGE analysis